TkA04G420050 | RubberDandelionOmics

Gene overview

TkA04G420050

Reference: TK1151 Chr: Chr04 Coordinates: 105830356-105831794 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1187 bp · TkA04G420050|TK1151|cDNA

TTATCTTCCTTAAGACTTCAATCTCGATAACCAGCATGCATCACAAGAATACCATTATCGTTCTCCTAGTTTCCCTTTCATCTTTCTTAGCTATTAATAGCCAGCTCGATTACTACTATTATTCATCGTGTCCTAACTTGCCTATGATTGTTAGATATGGTGTTTGGGCAGCTATGAAGAACGACTCGAGAATAGCAGCATCTATACTGCGTCTTCATTTCCACGACTGTTTTGTTAATGGTTGTGACGCTTCTATTCTT...

CDS

Download CDS FASTA

975 bp · TkA04G420050|TK1151|CDS

ATGCATCACAAGAATACCATTATCGTTCTCCTAGTTTCCCTTTCATCTTTCTTAGCTATTAATAGCCAGCTCGATTACTACTATTATTCATCGTGTCCTAACTTGCCTATGATTGTTAGATATGGTGTTTGGGCAGCTATGAAGAACGACTCGAGAATAGCAGCATCTATACTGCGTCTTCATTTCCACGACTGTTTTGTTAATGGTTGTGACGCTTCTATTCTTCTGGATGATACCAAAACCTTCAAAGGGGAGCAGAA...

Protein

Download Protein FASTA

324 aa · TkA04G420050|TK1151|PROTEIN

MHHKNTIIVLLVSLSSFLAINSQLDYYYYSSCPNLPMIVRYGVWAAMKNDSRIAASILRLHFHDCFVNGCDASILLDDTKTFKGEQKAGPNRNSVRGFDVIDNIKADVERACPFVVSCVDILTLAAREAVVLSGGPNWPVALGRRDGLTANLKAANQNLPTPFEPLENITAKFTAVGLDLKDVVALSGAHTIGLAQCFTFKNRLFDFKGTGQPDPNLDTSLASSLKTSCPNVAKSNTNLNSLDMVTTYMFDNAYYKNLVN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G420050`
TK1151 ID	TkA04G420050
OH-1004 ID	LXL04_024306
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	64.600
Protein coverage (%)	TK1151 93.827 / OH-1004 92.988 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G420050

Location Chr04:105830356-105831794 (+)

Description Similar to PER10: Peroxidase 10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g49570`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g06730`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g06720`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024306 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002215 defense response to nematode Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009611 response to wounding Biological Process

GO:0009908 flower development Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0004601 peroxidase activity Molecular Function

GO:0020037 heme binding Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G49570

ath:AT5G06720

ath:AT5G06730

nsy:104248753

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.327

Rank 1 · TkA04G420050 · TK1151

Extracellular0.295

Rank 2 · TkA04G420050 · TK1151

Cytoplasm0.119

Rank 3 · TkA04G420050 · TK1151

Cell membrane0.089

Rank 4 · TkA04G420050 · TK1151

Endoplasmic reticulum0.086

Rank 5 · TkA04G420050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141peroxidase39-285 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G420050	`PF00141`	peroxidase	39	285	2.5e-84	283.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FX85`	Arabidopsis thaliana	sp\|Q9FX85\|PER10_ARATH Peroxidase 10	66.700%	Swiss-Prot	High
`Q9FG34`	Arabidopsis thaliana	sp\|Q9FG34\|PER54_ARATH Peroxidase 54	53.900%	Swiss-Prot	High
`Q42578`	Arabidopsis thaliana	sp\|Q42578\|PER53_ARATH Peroxidase 53	53.300%	Swiss-Prot	High

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