TkA04G414960 | RubberDandelionOmics

Gene overview

TkA04G414960

Reference: TK1151 Chr: Chr04 Coordinates: 104523374-104525071 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1122 bp · TkA04G414960|TK1151|cDNA

CTTCACCACAGCACAATACCACCATGGTTAAAGCACTTAGAATTCTTGAGCACGGCGGCGCTGAGGTCATGAAATGGGAAGATGTTGAAGTCCCACATCCAAAAGAGGGCGAGATCAGGTTGAAACACAAGGCAATTGGTCTAAATTTCTGTGACGTGTACATGCGTGAAGGTCTGCATGATCGAGCTCCACCGTTGCCATATACTCCGGGAATGGAAGGAGCCGGAGTTGTAACGGCGGTGGGTCCCGGAGTAACCAAC...

CDS

Download CDS FASTA

750 bp · TkA04G414960|TK1151|CDS

ATGGTTAAAGCACTTAGAATTCTTGAGCACGGCGGCGCTGAGGTCATGAAATGGGAAGATGTTGAAGTCCCACATCCAAAAGAGGGCGAGATCAGGTTGAAACACAAGGCAATTGGTCTAAATTTCTGTGACGTGTACATGCGTGAAGGTCTGCATGATCGAGCTCCACCGTTGCCATATACTCCGGGAATGGAAGGAGCCGGAGTTGTAACGGCGGTGGGTCCCGGAGTAACCAACTGCAAAGTCGGAGATGTTGTCGC...

Protein

Download Protein FASTA

249 aa · TkA04G414960|TK1151|PROTEIN

MVKALRILEHGGAEVMKWEDVEVPHPKEGEIRLKHKAIGLNFCDVYMREGLHDRAPPLPYTPGMEGAGVVTAVGPGVTNCKVGDVVAYASLQVGAYAQERILPADLAVPVPSFINPVEVVAVIFKGLTAHVLIHKGFKVESGHTILVHAAAGEVGNLVCQWASAIGATVIGTVSTKEKVAQAKEDGCHHVILYKDENFADRVMEITSGKGVDAVYDSVGKDTFNGSLACLKYGGCMVLFGMASDPVHVD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G414960`
TK1151 ID	TkA04G414960
OH-1004 ID	LXL04_012063
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	83.700
Protein coverage (%)	TK1151 99.598 / OH-1004 76.292 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA04G414960`
Location	Chr04:104523374-104525071 (+)
Description	Similar to qor: Quinone oxidoreductase (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_012063` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0042206 halogenated hydrocarbon catabolic process Biological Process GO:1990748 cellular detoxification Biological Process GO:0005634 nucleus Cellular Component GO:0005829 cytosol Cellular Component GO:0003960 quinone reductase (NADPH) activity Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor Molecular Function GO:0035925 mRNA 3'-UTR AU-rich region binding Molecular Function GO:0042803 protein homodimerization activity Molecular Function GO:0070402 NADPH binding Molecular Function GO:0102523 2-chloroacrylate reductase activity Molecular Function
KEGG gene cross-reference	ag:BAD91551 ecj:JW4011 eco:b4051 ecoc:C3026_21890 pae:PA0023 spo:2538826 stm:STM4245 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.448

Rank 1 · TkA04G414960 · TK1151

Mitochondrion0.315

Rank 2 · TkA04G414960 · TK1151

Nucleus0.136

Rank 3 · TkA04G414960 · TK1151

Peroxisome0.118

Rank 4 · TkA04G414960 · TK1151

Cell membrane0.090

Rank 5 · TkA04G414960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16884ADH_N_215-87 aa

PF08240ADH_N28-111 aa

PF08240ADH_N140-174 aa

PF00107ADH_zinc_N154-246 aa

PF16884ADH_N_2165-179 aa

PF13602ADH_zinc_N_2186-240 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G414960	`PF16884`	ADH_N_2	15	87	0.00058	20.4
TkA04G414960	`PF08240`	ADH_N	28	111	1.1e-14	55.2
TkA04G414960	`PF08240`	ADH_N	140	174	1.1e-14	55.2
TkA04G414960	`PF00107`	ADH_zinc_N	154	246	5.1e-26	91.8
TkA04G414960	`PF16884`	ADH_N_2	165	179	0.00058	20.4
TkA04G414960	`PF13602`	ADH_zinc_N_2	186	240	4.1e-07	31.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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