TkA04G394150 | RubberDandelionOmics

Gene overview

TkA04G394150

Reference: TK1151 Chr: Chr04 Coordinates: 99112082-99114625 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2460 bp · TkA04G394150|TK1151|cDNA

CGAAAATTGGAGCTGTGGTTGAACCGGTCTACATTAACCCGGTGTTGCCTCCGGGTCACGGTCCGACCGGTTGGACCGGCCGGGTCGACCCGGGTTTTAAAACATTGGATTTAACCCTTTCGTTTTTGTTAAATTAATGGAGATATGATAGTAGTGGTGTTGTCTTTATCGGTAATCCCATATCCTTCTCTGTCTTCACTCGGTCACACACCATTGTTTCTCTCTCCACACAAATTGATTTGAATTCAAAATGGAAATCA...

CDS

Download CDS FASTA

1536 bp · TkA04G394150|TK1151|CDS

ATGATTAAGCAAATACTGAATAAGATTCCGAGGAAGCCATCTTCCAAATCATCACAGAACAACGAGACGGATTTAGTTGCGAGTAATGAAACTCGTAATTCTTCTGTTAAGTCGAATAATGGGAAGAAATCAGGTATAGTTGGAGCGGTCCAAGTGGTGCAGGTATCGGATGATGCTTCTTATGAAGCATTACCTAGTTTTCGAGTAGTATCAAGTTCAGAGAAACACAATTTGTTCATCAAAAAGTTGAATATGTGTTG...

Protein

Download Protein FASTA

511 aa · TkA04G394150|TK1151|PROTEIN

MIKQILNKIPRKPSSKSSQNNETDLVASNETRNSSVKSNNGKKSGIVGAVQVVQVSDDASYEALPSFRVVSSSEKHNLFIKKLNMCCVVFDFSDPSKNSKEKDVKKQTLLELVEYVSSVTSKFNEVTIQEITKMVSANLFRSLPDTTHENKLIDMYDQEDDEFRMDPSWPHLQIVYEFLLRCVASPETDPKLTKRYIDHSFVLKLLDLFDSEDQREREYLKTIVHRIYGKFMAHRPFIRNAINNIFYLFIFESEKHNGIA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G394150`
TK1151 ID	TkA04G394150
OH-1004 ID	LXL04_038128
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G394150

Location Chr04:99112082-99114625 (+)

Description Similar to B'GAMMA: Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g15415`	The B regulatory subunit may modulate substrate selectivity and catalytic activity, and may also direct the localization of the catalytic enzyme to a particular subcellular compartment (By similarity).	Regulatory subunit B'gamma of protein phosphatase 2A prevents unnecessary defense reactions under low light in Arabidopsis.2011 · DOI: 10.1104/pp.111.178442
`At3g21650`	The B regulatory subunit may modulate substrate selectivity and catalytic activity, and may also direct the localization of the catalytic enzyme to a particular subcellular compartment (By similarity).	No verified direct reference in this release
`At3g26020`	The B regulatory subunit may modulate substrate selectivity and catalytic activity, and may also direct the localization of the catalytic enzyme to a particular subcellular compartment (By similarity).	No verified direct reference in this release
`At1g13460`	The B regulatory subunit may modulate substrate selectivity and catalytic activity, and may also direct the localization of the catalytic enzyme to a particular subcellular compartment (By similarity).	No verified direct reference in this release
`At3g09880`	The B regulatory subunit may modulate substrate selectivity and catalytic activity, and may also direct the localization of the catalytic enzyme to a particular subcellular compartment (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038128 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000398 mRNA splicing, via spliceosome Biological Process

GO:0006555 methionine metabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009759 indole glucosinolate biosynthetic process Biological Process

GO:0009908 flower development Biological Process

GO:0010090 trichome morphogenesis Biological Process

GO:0010150 leaf senescence Biological Process

GO:0031348 negative regulation of defense response Biological Process

GO:0032000 positive regulation of fatty acid beta-oxidation Biological Process

GO:0033353 S-adenosylmethionine cycle Biological Process

KEGG gene cross-reference

ath:AT1G13460

ath:AT3G21650

ath:AT3G26020

ath:AT3G26030

ath:AT4G15415

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.620

Rank 1 · TkA04G394150 · TK1151

Nucleus0.285

Rank 2 · TkA04G394150 · TK1151

Cell membrane0.105

Rank 3 · TkA04G394150 · TK1151

Golgi apparatus0.100

Rank 4 · TkA04G394150 · TK1151

Lysosome / Vacuole0.096

Rank 5 · TkA04G394150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01603B5664-474 aa

PF07426Dynactin_p2269-149 aa

PF22481DUF698599-125 aa

PF22481DUF6985304-365 aa

PF22481DUF6985388-461 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G394150	`PF01603`	B56	64	474	2.7e-181	603.8
TkA04G394150	`PF07426`	Dynactin_p22	69	149	0.034	14.7
TkA04G394150	`PF22481`	DUF6985	99	125	0.63	11.2
TkA04G394150	`PF22481`	DUF6985	304	365	0.63	11.2
TkA04G394150	`PF22481`	DUF6985	388	461	0.63	11.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8RW96`	Arabidopsis thaliana	sp\|Q8RW96\|2A5G_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform	71.800%	Swiss-Prot	High
`Q9LVE2`	Arabidopsis thaliana	sp\|Q9LVE2\|2A5Z_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform	63.700%	Swiss-Prot	High
`Q9LU89`	Arabidopsis thaliana	sp\|Q9LU89\|2A5N_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform	72.000%	Swiss-Prot	High
`Q8LF36`	Arabidopsis thaliana	sp\|Q8LF36\|2A5T_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform	69.900%	Swiss-Prot	High
`O04376`	Arabidopsis thaliana	sp\|O04376\|2A5B_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform	65.300%	Swiss-Prot	High

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