TkA04G375970 | RubberDandelionOmics

Gene overview

TkA04G375970

Reference: TK1151 Chr: Chr04 Coordinates: 94757720-94760776 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1558 bp · TkA04G375970|TK1151|cDNA

AAAGAAACCACGTTAGATTCATAGAACAAGAAGACGTTTTCTTTCCTTCTCTCTTGTCTCTCTCATGTTATCTCATCCAGTTCATAACATTTCCCCAAAATCTTTTAAGAATTTAAATAGTAAACGAAAACCCATTTACCCGTTTTTCGTGTTTCCATCGTTTCTTGTGGGCCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTTTTTTCCGATCTCTTCTAGCATTCTTGGACCTTCTTGGCGTT...

CDS

Download CDS FASTA

717 bp · TkA04G375970|TK1151|CDS

ATGTCGTTGGCCGTTGAAGCTGTTTCCAGTTCCACTAACATGGGACTCGAAGAAAATAAAGAAAAGAAAACTGAAATTGAAGATAATGGAGATGAAAAAGGAAGCGAATCCTCCATTTATGAAACCGAAGATGAAGGAGAAGATTCACAGACTCCTAAAATCGACTTGGGTCCTCAATTCACCCTCAAAGAACAATTCGAGAAAGACAAGGATGACGAGAGTCTCAGAAAATGGAAAGAACAGCTACTTGGTAACGTCGA...

Protein

Download Protein FASTA

238 aa · TkA04G375970|TK1151|PROTEIN

MSLAVEAVSSSTNMGLEENKEKKTEIEDNGDEKGSESSIYETEDEGEDSQTPKIDLGPQFTLKEQFEKDKDDESLRKWKEQLLGNVDINTVGESLEPEVKIISLSILSPGRSDIVLAIPEDGKPNGPWFTLKEGSRYSLRFSFQVCRNIVSGLKYTNNVWKTGVKVDGVKQMLGTFSPQQEAYTYDMPEETTPSGYFARGSYSAKTKFVDDDGKCYLEINYTFDIRKDWGSVETTKTP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G375970`
TK1151 ID	TkA04G375970
OH-1004 ID	LXL04_038024
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G375970

Location Chr04:94757720-94760776 (-)

Description Similar to GDI1: Rho GDP-dissociation inhibitor 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g07880`	Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038024 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007266 Rho protein signal transduction Biological Process

GO:0009932 cell tip growth Biological Process

GO:0010053 root epidermal cell differentiation Biological Process

GO:0035023 regulation of Rho protein signal transduction Biological Process

GO:0071526 semaphorin-plexin signaling pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0016020 membrane Cellular Component

GO:0070062 extracellular exosome Cellular Component

GO:0003924 GTPase activity Molecular Function

KEGG gene cross-reference

ath:AT3G07880

bta:327676

hsa:396

mcf:101866857

mmu:11857

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.685

Rank 1 · TkA04G375970 · TK1151

Nucleus0.247

Rank 2 · TkA04G375970 · TK1151

Golgi apparatus0.152

Rank 3 · TkA04G375970 · TK1151

Cell membrane0.116

Rank 4 · TkA04G375970 · TK1151

Endoplasmic reticulum0.106

Rank 5 · TkA04G375970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06356DUF106422-69 aa

PF02087Nitrophorin36-45 aa

PF02115Rho_GDI42-228 aa

PF06356DUF1064136-158 aa

PF20622Big_15154-185 aa

PF02087Nitrophorin166-218 aa

PF24440DUF7559183-192 aa

PF06356DUF1064202-225 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G375970	`PF06356`	DUF1064	22	69	0.78	10.9
TkA04G375970	`PF02087`	Nitrophorin	36	45	0.19	12.3
TkA04G375970	`PF02115`	Rho_GDI	42	228	2.8e-84	282.3
TkA04G375970	`PF06356`	DUF1064	136	158	0.78	10.9
TkA04G375970	`PF20622`	Big_15	154	185	0.085	13.4
TkA04G375970	`PF02087`	Nitrophorin	166	218	0.19	12.3
TkA04G375970	`PF24440`	DUF7559	183	192	0.48	11.4
TkA04G375970	`PF06356`	DUF1064	202	225	0.78	10.9
TkA04G375970	`PF24440`	DUF7559	217	230	0.48	11.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SFC6`	Arabidopsis thaliana	sp\|Q9SFC6\|GDIR_ARATH Rho GDP-dissociation inhibitor 1	72.200%	Swiss-Prot	High

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