TkA04G374740 | RubberDandelionOmics

Gene overview

TkA04G374740

Reference: TK1151 Chr: Chr04 Coordinates: 94460328-94463261 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1134 bp · TkA04G374740|TK1151|cDNA

ATGGCATTGATTGAAAAGAACCACGCTGCGGTTGTCAACGTTAAAACTAAAGGTGCCAAGGGAGATGGCAAATCCGATGATGGCCCGGCTATAATAAGTGCTTGGAAAGAAGCATGTGGAGGTCCACCACCAAGCTCCGTTTTGTTTCCGGCCGGGACTTATTTCGCAGCTCCTCCTCTTCACCTCAAAGGTCCATGCAAAGGTCCGATTGAGATCAAGGCCACCGGAGCAACCATCAAAGCCCCACCGGAGGTTGCAAA...

CDS

Download CDS FASTA

1134 bp · TkA04G374740|TK1151|CDS

ATGGCATTGATTGAAAAGAACCACGCTGCGGTTGTCAACGTTAAAACTAAAGGTGCCAAGGGAGATGGCAAATCCGATGATGGCCCGGCTATAATAAGTGCTTGGAAAGAAGCATGTGGAGGTCCACCACCAAGCTCCGTTTTGTTTCCGGCCGGGACTTATTTCGCAGCTCCTCCTCTTCACCTCAAAGGTCCATGCAAAGGTCCGATTGAGATCAAGGCCACCGGAGCAACCATCAAAGCCCCACCGGAGGTTGCAAA...

Protein

Download Protein FASTA

377 aa · TkA04G374740|TK1151|PROTEIN

MALIEKNHAAVVNVKTKGAKGDGKSDDGPAIISAWKEACGGPPPSSVLFPAGTYFAAPPLHLKGPCKGPIEIKATGATIKAPPEVAKFKTEGWIEIEGVDKLTLTGGNYDGQGQATWKSNNCASTGVCKLPANIRLTNCKNAVVKDLTSTNSKFFHINILGCDNAKLDHVTINAPGTSLNTDGIHIGRLNGLNITNTNIKTGDDCISFGDGSKNVHIEKVTCGPGHGISIGSLGRWPNELPVQGIWIKNCTITGTNNGVR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G374740`
TK1151 ID	TkA04G374740
OH-1004 ID	LXL04_038017
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.800
Protein coverage (%)	TK1151 100.000 / OH-1004 96.235 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G374740

Location Chr04:94460328-94463261 (+)

Description Similar to plaa2: Exopolygalacturonase (Fragment)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g07850`	May function in depolymerizing pectin during pollen development, germination, and tube growth.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038017 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0009555 pollen development Biological Process

GO:0009846 pollen germination Biological Process

GO:0045490 pectin catabolic process Biological Process

GO:0048868 pollen tube development Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0031982 vesicle Cellular Component

GO:0043667 pollen wall Cellular Component

GO:0004650 polygalacturonase activity Molecular Function

KEGG gene cross-reference

ath:AT3G07850

ghi:107942091

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.973

Rank 1 · TkA04G374740 · TK1151

Cell membrane0.020

Rank 2 · TkA04G374740 · TK1151

Cytoplasm0.020

Rank 3 · TkA04G374740 · TK1151

Endoplasmic reticulum0.011

Rank 4 · TkA04G374740 · TK1151

Golgi apparatus0.007

Rank 5 · TkA04G374740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12708Pect-lyase_RHGA_epim12-260 aa

PF00295Glyco_hydro_2839-365 aa

PF13229Beta_helix132-264 aa

PF13229Beta_helix183-261 aa

PF12708Pect-lyase_RHGA_epim297-337 aa

PF13229Beta_helix308-322 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G374740	`PF12708`	Pect-lyase_RHGA_epim	12	260	2.5e-13	51.0
TkA04G374740	`PF00295`	Glyco_hydro_28	39	365	6e-93	312.2
TkA04G374740	`PF13229`	Beta_helix	132	264	0.012	16.0
TkA04G374740	`PF13229`	Beta_helix	183	261	0.012	16.0
TkA04G374740	`PF12708`	Pect-lyase_RHGA_epim	297	337	2.5e-13	51.0
TkA04G374740	`PF13229`	Beta_helix	308	322	0.012	16.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P49063`	Arabidopsis thaliana	sp\|P49063\|PGLR2_ARATH Exopolygalacturonase	54.300%	Swiss-Prot	High

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