RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G367830
Reference: TK1151 Chr: Chr04 Coordinates: 92457270-92462992 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1273 bp · TkA04G367830|TK1151|cDNA

AAAAAGGATCATTTTCATCAACCATGTTAAAAATCTAGTGGTTTATTGTTCATAAAATATGACAATTTTTGCTAGAACGCTGTTTGGCTTTACAAAAATAGGTAACTTCTCCCCGAAGCTAAACTTAAAAAAGAGCCATCCCATTTTTACAAAGCCGTAACCCTATTTTTTCAGCGCAAAACTCTCGCCGCTTCGCCATAAGAACCATAGCTTTACTTCGGTGCCCTAAATTCGACGATTCGGACCACCAAATTTCTATC...

CDS

Download CDS FASTA

1122 bp · TkA04G367830|TK1151|CDS

ATGGGATCTAAGCGATCTGACTTCGGCGACGGCGCCAGTCCCGGGAAGATATTTATCGGAGGCTTAGCGAGAGATACTAGTATAGATGCTTTTGTTAAGTACTTTGGCAAGTATGGAGAGATTACGGACTCGGTTATTATGAAAGATCGACAAACTGGTCGGCCGAGAGGTTTTGGATTTATCACATATGCAGATCCTTCTGTTGTTGACACTGTAATTGCTGAGACACATGTCATAAATGGAAAACAGGTTGAGATCAA...

Protein

Download Protein FASTA

373 aa · TkA04G367830|TK1151|PROTEIN

MGSKRSDFGDGASPGKIFIGGLARDTSIDAFVKYFGKYGEITDSVIMKDRQTGRPRGFGFITYADPSVVDTVIAETHVINGKQVEIKRTIPKGSGESRDYKTKKIFVGGIPTSVTEDELKDFFSKHGTIVEHEIIRDHVTKRSRGFGFIVFDSEQTVDEILVNGNMIDMNGTQVEIKKAEPKKPSNPAPHSYNREPKGRGYTDSFDAYDDPYGGGYGGIGGGGGGGGGYGPPSYRSFSGIPSRYGDYGPYGPGASEFANR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G367830
TK1151 IDTkA04G367830
OH-1004 IDLXL04_037958
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G367830
LocationChr04:92457270-92462992 (-)
DescriptionSimilar to RNP1: Heterogeneous nuclear ribonucleoprotein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g14300 Involved with pre-mRNA processing. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037958 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0007283 spermatogenesis Biological Process
GO:0007319 negative regulation of oskar mRNA translation Biological Process
GO:0008283 cell population proliferation Biological Process
GO:0008380 RNA splicing Biological Process
GO:0010228 vegetative to reproductive phase transition of meristem Biological Process
GO:0030154 cell differentiation Biological Process
GO:0045727 positive regulation of translation Biological Process
GO:0048024 regulation of mRNA splicing, via spliceosome Biological Process
GO:0048026 positive regulation of mRNA splicing, via spliceosome Biological Process
GO:0051028 mRNA transport Biological Process
GO:1901000 regulation of response to salt stress Biological Process
KEGG gene cross-reference
ath:AT4G14300
dme:Dmel_CG10377
hsa:26528
mmu:70248
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.839
Rank 1 · TkA04G367830 · TK1151
Cytoplasm0.379
Rank 2 · TkA04G367830 · TK1151
Cell membrane0.033
Rank 3 · TkA04G367830 · TK1151
Endoplasmic reticulum0.027
Rank 4 · TkA04G367830 · TK1151
Mitochondrion0.022
Rank 5 · TkA04G367830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16367RRM_716-79 aa
PF00076RRM_117-75 aa
PF23085RRM_PARP14_318-87 aa
PF14703PHM7_cyt24-73 aa
PF26250RRM_RdRP1_246-64 aa
PF28923Icarapin_C75-96 aa
PF26250RRM_RdRP1_286-101 aa
PF28978RRM_SRRT101-173 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G367830PF16367RRM_716799.3e-1555.1
TkA04G367830PF00076RRM_117751.5e-32112.0
TkA04G367830PF23085RRM_PARP14_318873.6e-0834.1
TkA04G367830PF14703PHM7_cyt24730.02415.6
TkA04G367830PF26250RRM_RdRP1_246640.002518.9
TkA04G367830PF28923Icarapin_C75960.05713.6
TkA04G367830PF26250RRM_RdRP1_2861010.002518.9
TkA04G367830PF28978RRM_SRRT1011730.08113.8
TkA04G367830PF23085RRM_PARP14_31021753.6e-0834.1
TkA04G367830PF16367RRM_71031659.3e-1555.1
TkA04G367830PF00076RRM_11051731.5e-32112.0
TkA04G367830PF14703PHM7_cyt1051370.02415.6
TkA04G367830PF26250RRM_RdRP1_21071550.002518.9
TkA04G367830PF14703PHM7_cyt1331690.02415.6
TkA04G367830PF28923Icarapin_C1611750.05713.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8W034Arabidopsis thalianasp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 140.800%Swiss-ProtLow

JBrowse

View in Genome Browser