TkA04G367790 | RubberDandelionOmics

Gene overview

TkA04G367790

Reference: TK1151 Chr: Chr04 Coordinates: 92444609-92449621 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2858 bp · TkA04G367790|TK1151|cDNA

ATTTTGTGTTGTGAAAATTTCAAATGAACACAATAAGAAGTAAGAGGATAGTGGATTAATTTGAGTTTCTCGAAAGGATCACAAAAATATTGACTACCAAGTATATTATAAAGCTTCTATTTATACCTTTCTCCGCCTTCTTCCAAGCTTTATGCTCCATGAATTTCTCACTACTGAGGAAAGGGAACAATTCGACTCATTCCTAAAGGTCTGGACCCAATCTCCTTTATGATCTTTTCGTGATTTGACTGGCCTTGAAC...

CDS

Download CDS FASTA

2190 bp · TkA04G367790|TK1151|CDS

ATGGATGATTCTGAGGGAACTGTTATCAATGCTCCTACAGCTGAAGAGATGGCTCTTAGTGGTTTCTTCTCCACATTCTTGGACGACAAATCATACAGTACAGCTGTAGCAGCAGTTATTGTCGCCATTGCTGTCCCACTGGTTCTTTCCTCCATGTTCATGGGGAAGAACAAGAAGGCGAAACAAAGAGGTGTTCCTGTTGAAGTAGGTGGTGAGCCAGGTTTTGCCATGCGTAATGCCAGATCAAGCAAACTAGTTGA...

Protein

Download Protein FASTA

729 aa · TkA04G367790|TK1151|PROTEIN

MDDSEGTVINAPTAEEMALSGFFSTFLDDKSYSTAVAAVIVAIAVPLVLSSMFMGKNKKAKQRGVPVEVGGEPGFAMRNARSSKLVEVPWEGATTMAALFEQSCKKHSQHRFLGTRKIVERDFVTGSDGRKFEKLHLGEYQWETYGKIFERVSNFASGLIHLGHDPDTRIAIFSDTRAEWFIAFQGCFRQNITVVTIYASLGDDALIHSLNETKASTLICDSKLMKKVASVSSSLKTVKNVVYFESENTEVYTNISDYKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G367790`
TK1151 ID	TkA04G367790
OH-1004 ID	LXL04_037959
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	95.200
Protein coverage (%)	TK1151 99.863 / OH-1004 99.868 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G367790

Location Chr04:92444609-92449621 (-)

Description Similar to LACS8: Long chain acyl-CoA synthetase 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g04350`	Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation.	No verified direct reference in this release
`At1g77590`	Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation.	Fatty acid export from the chloroplast. Molecular characterization of a major plastidial acyl-coenzyme A synthetase from Arabidopsis.2002 · DOI: 10.1104/pp.003251

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037959 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001676 long-chain fatty acid metabolic process Biological Process

GO:0006631 fatty acid metabolic process Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0007584 response to nutrient Biological Process

GO:0034379 very-low-density lipoprotein particle assembly Biological Process

GO:0035336 long-chain fatty-acyl-CoA metabolic process Biological Process

GO:0035338 long-chain fatty-acyl-CoA biosynthetic process Biological Process

GO:0042998 positive regulation of Golgi to plasma membrane protein transport Biological Process

GO:0044539 long-chain fatty acid import into cell Biological Process

GO:0051047 positive regulation of secretion Biological Process

GO:2001247 positive regulation of phosphatidylcholine biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT1G77590

ath:AT2G04350

hsa:2181

pon:100174659

rno:114024

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.536

Rank 1 · TkA04G367790 · TK1151

Cytoplasm0.153

Rank 2 · TkA04G367790 · TK1151

Mitochondrion0.152

Rank 3 · TkA04G367790 · TK1151

Cell membrane0.112

Rank 4 · TkA04G367790 · TK1151

Peroxisome0.089

Rank 5 · TkA04G367790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00501AMP-binding136-550 aa

PF01944SpoIIM274-366 aa

PF13193AMP-binding_C606-648 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G367790	`PF00501`	AMP-binding	136	550	7.9e-85	285.7
TkA04G367790	`PF01944`	SpoIIM	274	366	0.00086	19.9
TkA04G367790	`PF13193`	AMP-binding_C	606	648	0.017	16.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SJD4`	Arabidopsis thaliana	sp\|Q9SJD4\|LACS8_ARATH Long chain acyl-CoA synthetase 8	70.300%	Swiss-Prot	High
`Q9CAP8`	Arabidopsis thaliana	sp\|Q9CAP8\|LACS9_ARATH Long chain acyl-CoA synthetase 9, chloroplastic	65.600%	Swiss-Prot	High

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