RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G359570
Reference: TK1151 Chr: Chr04 Coordinates: 90594501-90595871 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1215 bp · TkA04G359570|TK1151|cDNA

ATGATACTGGTGTGGATCTGGAACAACAGCAAAGAAACATTACAGGTAATTGACCTCTCCCACAACTCCATCACCGGATTTGATGACAATCCCCAGTTTCTCCCATGGGGACGTTTACAAGAATTTGACATCTACAGTAACCAAGCACAAGGACAGCTGCCAATCCCACCACAAACCACTGTTATATATGATGTCTCCCATAATCATTTCATGGGTGAAATACCACCACTCATATGTGAAGTGAAATCTCTCCGAGTGCT...

CDS

Download CDS FASTA

1215 bp · TkA04G359570|TK1151|CDS

ATGATACTGGTGTGGATCTGGAACAACAGCAAAGAAACATTACAGGTAATTGACCTCTCCCACAACTCCATCACCGGATTTGATGACAATCCCCAGTTTCTCCCATGGGGACGTTTACAAGAATTTGACATCTACAGTAACCAAGCACAAGGACAGCTGCCAATCCCACCACAAACCACTGTTATATATGATGTCTCCCATAATCATTTCATGGGTGAAATACCACCACTCATATGTGAAGTGAAATCTCTCCGAGTGCT...

Protein

Download Protein FASTA

404 aa · TkA04G359570|TK1151|PROTEIN

MILVWIWNNSKETLQVIDLSHNSITGFDDNPQFLPWGRLQEFDIYSNQAQGQLPIPPQTTVIYDVSHNHFMGEIPPLICEVKSLRVLDLSSNSMSGTLPLCFSNLISLLVTLDLIRNKLHGRMMDVFMHGSQLKSIDLSENQFSGKMPRSLTNCTNLEILSLGDNSFKEVFPYWLGTLPNLQVLVLRANNFYGPIQGSASICSQFPKLRIIDLSNNRFSGLLHHNYFQACNAIKIVYDSESFVMVTTNIFGSITTFSPYH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G359570
TK1151 IDTkA04G359570
OH-1004 IDLXL04_037947
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)57.300
Protein coverage (%)TK1151 100.000 / OH-1004 43.985
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G359570
LocationChr04:90594501-90595871 (+)
DescriptionSimilar to RLP7: Receptor-like protein 7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g47890 Receptor-like protein 7. No verified direct reference in this release
At4g13810 Receptor-like protein 47. No verified direct reference in this release
At2g33060 Receptor like protein 27. No verified direct reference in this release
At4g13900 Receptor-like protein 49. No verified direct reference in this release
At3g05360 Receptor for microbe-associated molecular patterns (MAMPs) that induces a BAK1-dependent basal immune response to necrotrophic fungi (e.g. S.sclerotiorum) in the presence of MAMPs (e.g. flg22 and SCLEROTINIA CULTURE FILTRATE ELICITOR1 (SCFE1) from the necrotrophic fungal pathogen S.sclerotiorum).
Arabidopsis receptor-like protein30 and receptor-like kinase suppressor of BIR1-1/EVERSHED mediate innate immunity to necrotrophic fungi.2013 · DOI: 10.1105/tpc.113.117010

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037947 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0009791 post-embryonic development Biological Process
GO:0051707 response to other organism Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G45616
ath:AT1G47890
ath:AT3G11010
ath:AT4G13920
ath:AT5G27060
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.873
Rank 1 · TkA04G359570 · TK1151
Endoplasmic reticulum0.090
Rank 2 · TkA04G359570 · TK1151
Cytoplasm0.057
Rank 3 · TkA04G359570 · TK1151
Nucleus0.040
Rank 4 · TkA04G359570 · TK1151
Lysosome / Vacuole0.024
Rank 5 · TkA04G359570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13516LRR_612-25 aa
PF14580LRR_912-95 aa
PF13855LRR_813-29 aa
PF12799LRR_413-47 aa
PF24048LRR_NXF1-513-24 aa
PF00560LRR_114-28 aa
PF22748PexRD54_WY14-36 aa
PF24141LRR_ComC28-81 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G359570PF13516LRR_612253e-0524.5
TkA04G359570PF14580LRR_912950.006316.8
TkA04G359570PF13855LRR_813291.5e-2279.8
TkA04G359570PF12799LRR_413471.3e-2073.7
TkA04G359570PF24048LRR_NXF1-513242.6e-0627.8
TkA04G359570PF00560LRR_114282.4e-2686.8
TkA04G359570PF22748PexRD54_WY14360.1312.9
TkA04G359570PF24141LRR_ComC28810.1512.4
TkA04G359570PF00560LRR_138542.4e-2686.8
TkA04G359570PF25013LRR_Zer-159940.000123.1
TkA04G359570PF00560LRR_164792.4e-2686.8
TkA04G359570PF13516LRR_664693e-0524.5
TkA04G359570PF19181DUF5863681030.1512.6
TkA04G359570PF24758LRR_At5g56370732210.2111.9
TkA04G359570PF24048LRR_NXF1-576952.6e-0627.8
TkA04G359570PF23598LRR_14792162.7e-0523.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C699Arabidopsis thalianasp|Q9C699|RLP7_ARATH Receptor-like protein 746.200%Swiss-ProtMedium
Q9SVN2Arabidopsis thalianasp|Q9SVN2|RLP47_ARATH Receptor-like protein 4730.700%Swiss-ProtMedium
F4IUU1Arabidopsis thalianasp|F4IUU1|RLP27_ARATH Receptor like protein 2725.300%Swiss-ProtLow
Q9SVM3Arabidopsis thalianasp|Q9SVM3|RLP49_ARATH Receptor-like protein 4930.100%Swiss-ProtMedium
Q9MA83Arabidopsis thalianasp|Q9MA83|RLP30_ARATH Receptor-like protein 3039.900%Swiss-ProtMedium

JBrowse

View in Genome Browser