TkA04G356020 | RubberDandelionOmics

Gene overview

TkA04G356020

Reference: TK1151 Chr: Chr04 Coordinates: 89816274-89818115 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1548 bp · TkA04G356020|TK1151|cDNA

ATGGCTTCATTACAACTTCTTACCACCTTCACCACCACCGCCACCCCAAGAAAACAGCCAAATCCCACCTCCAGCCGCCGTTCCAAGACCTACCCCAAACAAACCCACCGCTTCAAAGTCTCATGCAACGTCGCAAAAGATGACAATGAGAACCTACTACTAGTCCCGGAATCCCAAAAACTTATACTTAATGTGGATCGGAGGAACTTGCTCCTTGGACTCAGCGGCGCCGGCCTTTACACCTCCCTTCCGGCGGCTTT...

CDS

Download CDS FASTA

1548 bp · TkA04G356020|TK1151|CDS

ATGGCTTCATTACAACTTCTTACCACCTTCACCACCACCGCCACCCCAAGAAAACAGCCAAATCCCACCTCCAGCCGCCGTTCCAAGACCTACCCCAAACAAACCCACCGCTTCAAAGTCTCATGCAACGTCGCAAAAGATGACAATGAGAACCTACTACTAGTCCCGGAATCCCAAAAACTTATACTTAATGTGGATCGGAGGAACTTGCTCCTTGGACTCAGCGGCGCCGGCCTTTACACCTCCCTTCCGGCGGCTTT...

Protein

Download Protein FASTA

515 aa · TkA04G356020|TK1151|PROTEIN

MASLQLLTTFTTTATPRKQPNPTSSRRSKTYPKQTHRFKVSCNVAKDDNENLLLVPESQKLILNVDRRNLLLGLSGAGLYTSLPAAFAAPITTPDISTCIPSESEDTTTRIRPAAHRATPEYVAKYKAAIQAMRDLPDDHPHSFVSQAKIHCAYCNGGYTQVAKRILGKLIDDPTFALPYWNWDHPAGMTLPAFFENDGKRNPVFDAYRNVTHVTPTAIVDLDYNGSDSGAPCLQQINTNLTAMYKLMVSNAADPLSFFG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G356020`
TK1151 ID	TkA04G356020
OH-1004 ID	LXL04_037836
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	83.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA04G356020`
Location	Chr04:89816274-89818115 (+)
Description	Similar to co-2: Polyphenol oxidase II, chloroplastic
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_037836` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0046148 pigment biosynthetic process Biological Process GO:0009543 chloroplast thylakoid lumen Cellular Component GO:0004097 catechol oxidase activity Molecular Function GO:0005507 copper ion binding Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	mdm:103446446 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.945

Rank 1 · TkA04G356020 · TK1151

Mitochondrion0.034

Rank 2 · TkA04G356020 · TK1151

Extracellular0.032

Rank 3 · TkA04G356020 · TK1151

Cytoplasm0.024

Rank 4 · TkA04G356020 · TK1151

Lysosome / Vacuole0.023

Rank 5 · TkA04G356020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00264Tyrosinase163-331 aa

PF12142PPO1_DWL340-389 aa

PF12143PPO1_KFDV416-510 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G356020	`PF00264`	Tyrosinase	163	331	3e-22	80.8
TkA04G356020	`PF12142`	PPO1_DWL	340	389	1.4e-21	76.6
TkA04G356020	`PF12143`	PPO1_KFDV	416	510	3e-19	70.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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