TkA04G344710 | RubberDandelionOmics

Gene overview

TkA04G344710

Reference: TK1151 Chr: Chr04 Coordinates: 87155693-87157742 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1389 bp · TkA04G344710|TK1151|cDNA

ATGAACCAAAGACAATCCATAGCGTCTACTTTTCAGAAACAAACAACATTACAAGAAAAAGAAAATCGTATATGTTTGAATCATTCAATTGATTGTTGGTTAGTTGATCAATGTGATGTGGCAGATCGAGCTGTGTTAAAGAATGCTCCAAAAAATACACAATTGGTATGCAGTGATGTGCAAAAAGATATTGTTCAGGCATGTTCAGATGCAGTTTTGAATATTATTTTTGAAGATCTTGGAAAAGATTATTTTGCAAT...

CDS

Download CDS FASTA

1389 bp · TkA04G344710|TK1151|CDS

ATGAACCAAAGACAATCCATAGCGTCTACTTTTCAGAAACAAACAACATTACAAGAAAAAGAAAATCGTATATGTTTGAATCATTCAATTGATTGTTGGTTAGTTGATCAATGTGATGTGGCAGATCGAGCTGTGTTAAAGAATGCTCCAAAAAATACACAATTGGTATGCAGTGATGTGCAAAAAGATATTGTTCAGGCATGTTCAGATGCAGTTTTGAATATTATTTTTGAAGATCTTGGAAAAGATTATTTTGCAAT...

Protein

Download Protein FASTA

462 aa · TkA04G344710|TK1151|PROTEIN

MNQRQSIASTFQKQTTLQEKENRICLNHSIDCWLVDQCDVADRAVLKNAPKNTQLVCSDVQKDIVQACSDAVLNIIFEDLGKDYFAILVDESRDVSCKEQLALVLRFVNKNVSRLINIIGSSYKRRDNLRKKQANKVMEALAEGELESGTGLNQEVDLGEDNSDRDRRAEAIRILKSIKSFDFVFCLHMMVDILAVTNHLNIIWQKKDQDIVNAMNQVSTSKKALQDIRDVGWEPLLRNITLFCDNHDVQIVDMEDAYYN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G344710`
TK1151 ID	TkA04G344710
OH-1004 ID	LXL04_018209
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	73.500
Protein coverage (%)	TK1151 61.905 / OH-1004 53.898 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA04G344710`
Location	Chr04:87155693-87157742 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_018209` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.661

Rank 1 · TkA04G344710 · TK1151

Cytoplasm0.369

Rank 2 · TkA04G344710 · TK1151

Mitochondrion0.036

Rank 3 · TkA04G344710 · TK1151

Extracellular0.023

Rank 4 · TkA04G344710 · TK1151

Endoplasmic reticulum0.017

Rank 5 · TkA04G344710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14291DUF43711-33 aa

PF14291DUF437133-113 aa

PF08283Gemini_AL1_M60-85 aa

PF27073FAM200-ZBED5_RNase-like77-112 aa

PF08283Gemini_AL1_M165-217 aa

PF08283Gemini_AL1_M330-342 aa

PF05699Dimer_Tnp_hAT378-434 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G344710	`PF14291`	DUF4371	1	33	1.5e-28	100.7
TkA04G344710	`PF14291`	DUF4371	33	113	1.5e-28	100.7
TkA04G344710	`PF08283`	Gemini_AL1_M	60	85	0.21	12.4
TkA04G344710	`PF27073`	FAM200-ZBED5_RNase-like	77	112	0.023	15.1
TkA04G344710	`PF08283`	Gemini_AL1_M	165	217	0.21	12.4
TkA04G344710	`PF08283`	Gemini_AL1_M	330	342	0.21	12.4
TkA04G344710	`PF05699`	Dimer_Tnp_hAT	378	434	7.8e-07	29.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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