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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G342290
Reference: TK1151 Chr: Chr04 Coordinates: 86424875-86430479 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3487 bp · TkA04G342290|TK1151|cDNA

CCCGATTCTAGATCGGTTGGGATTTCATTTTCTATCTGTAGGTTTCAATGGCGTTTGAAGATCAAAATCCTTCCATCTGTAATCTTGTTGCTGTGTCATCTTCTAAAGCTCCCTCTCAACTAAATAAACCCCATTTATTCCTGTCAAAATCCGCCATCGCCGTCACGCCATGGCCCACGACACCTCTCTCCCTCTCTCTCTCTCTCTTGGATTCTTTCTCTCTACCACTACAATTACCCTTCCTGCGCCTATCTCTTTTG...

CDS

Download CDS FASTA

2022 bp · TkA04G342290|TK1151|CDS

ATGCTTTGTTTACCTCTCCGTTCTATTTCCCCTCACCCCAAAATCCAATTTCGATCACAAACTCAAGTGTCGAGATTCTTGTCAACAACCCATTTTGGTCATCTCCATCATCGGCGTAATGATTTGAACAGCATTATCCACAGGAGTTACGGATATACTCTTCGTCCATGTCCTTGTTTGAAATCCGAAACCGAAATCTTCACTTCGAGCGAAGAAGAGTTCGATATGGAATTAGGCCGCCTGTTGAGGCTGTTGCCGGA...

Protein

Download Protein FASTA

673 aa · TkA04G342290|TK1151|PROTEIN

MLCLPLRSISPHPKIQFRSQTQVSRFLSTTHFGHLHHRRNDLNSIIHRSYGYTLRPCPCLKSETEIFTSSEEEFDMELGRLLRLLPEEMRRRANEHQELHQLIEVVMDLGRKPLARFPSGDFVLSDHLITVDDLEHATSLVGDFAIDNRAGISRTLHRISAIRNRKGAIIGLTCRVGRAISGSAKLLQDLVKDGASLLLIGPPGVGKTTIIRDIARMLANEYKKRVMIVDTSNEIGGDGDIPHAGIGNARRMQVPDTDMQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G342290
TK1151 IDTkA04G342290
OH-1004 IDLXL04_037713
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)96.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G342290
LocationChr04:86424875-86430479 (+)
DescriptionSimilar to SPD1: Protein SEEDLING PLASTID DEVELOPMENT 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g10420 Required during eoplast (a highly reduced plastid type present during the degreening and dehydration stages of seed maturation) development in embryos and early stages of eoplast redifferentiation during seedling growth.
A mutation in Arabidopsis seedling plastid development1 affects plastid differentiation in embryo-derived tissues during seedling growth.2011 · DOI: 10.1104/pp.110.161414

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037713 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009657 plastid organization Biological Process
GO:0010431 seed maturation Biological Process
GO:0030435 sporulation resulting in formation of a cellular spore Biological Process
GO:0090677 reversible differentiation Biological Process
GO:0009507 chloroplast Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0031969 chloroplast membrane Cellular Component
GO:0031972 chloroplast intermembrane space Cellular Component
GO:0003676 nucleic acid binding Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT3G10420
bsu:BSU24430
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.855
Rank 1 · TkA04G342290 · TK1151
Mitochondrion0.090
Rank 2 · TkA04G342290 · TK1151
Nucleus0.064
Rank 3 · TkA04G342290 · TK1151
Cytoplasm0.064
Rank 4 · TkA04G342290 · TK1151
Peroxisome0.032
Rank 5 · TkA04G342290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00437T2SSE13-52 aa
PF13401AAA_2278-137 aa
PF20030bpMoxR79-104 aa
PF19568Spore_III_AA171-323 aa
PF00437T2SSE183-306 aa
PF02367TsaE184-220 aa
PF03193RsgA_GTPase184-217 aa
PF13481AAA_25185-219 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G342290PF00437T2SSE13520.004816.3
TkA04G342290PF13401AAA_22781374.4e-0627.7
TkA04G342290PF20030bpMoxR791040.01315.3
TkA04G342290PF19568Spore_III_AA1713239.9e-1555.2
TkA04G342290PF00437T2SSE1833060.004816.3
TkA04G342290PF02367TsaE1842200.01316.2
TkA04G342290PF03193RsgA_GTPase1842170.0713.7
TkA04G342290PF13481AAA_251852190.0001222.5
TkA04G342290PF13604AAA_301852830.0002521.6
TkA04G342290PF00931NB-ARC1852330.01315.8
TkA04G342290PF04851ResIII1852310.02315.3
TkA04G342290PF12775AAA_71862260.0001322.3
TkA04G342290PF20720nSTAND31882320.0001422.3
TkA04G342290PF01695IstB_IS211892110.1312.4
TkA04G342290PF13086AAA_111912330.0009319.8
TkA04G342290PF00005ABC_tran1912200.01916.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4J3R7Arabidopsis thalianasp|F4J3R7|SPD1_ARATH Protein SEEDLING PLASTID DEVELOPMENT 148.600%Swiss-ProtMedium

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