Gene Card
Gene overview
cDNA / CDS / Protein Sequences
444 bp · TkA04G340070|TK1151|cDNA
ATGAGTGCACTGCCCGAAGATGTCCCTGGGACTGACCCGGTTATAAACCGGATGGAGGCAGCAAAAAACCCCTTTGATGACGCAAATTTCTTGATTTCTGTTTTCTTGGCGAAAGACATCTATAAACTAATTCCTGAAAATTTCCAGTATATTGACTGGATTACTGTATCTCGGTTTATAAAACGGAGGAAAGAGATCCAACACGTCGGCTTCAACTATCCAACAGAGCAACTCCGAGCTCGTTGGAAAGAGCTCAGGGA...
444 bp · TkA04G340070|TK1151|CDS
ATGAGTGCACTGCCCGAAGATGTCCCTGGGACTGACCCGGTTATAAACCGGATGGAGGCAGCAAAAAACCCCTTTGATGACGCAAATTTCTTGATTTCTGTTTTCTTGGCGAAAGACATCTATAAACTAATTCCTGAAAATTTCCAGTATATTGACTGGATTACTGTATCTCGGTTTATAAAACGGAGGAAAGAGATCCAACACGTCGGCTTCAACTATCCAACAGAGCAACTCCGAGCTCGTTGGAAAGAGCTCAGGGA...
Protein
Download Protein FASTA147 aa · TkA04G340070|TK1151|PROTEIN
MSALPEDVPGTDPVINRMEAAKNPFDDANFLISVFLAKDIYKLIPENFQYIDWITVSRFIKRRKEIQHVGFNYPTEQLRARWKELRDGYNKNQEAGDVPLNIWTGVFALVQKSAMVTPKICDHIHTVYESFSCNQIILNNIVAINPF
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G340070 |
|---|---|
| TK1151 ID | TkA04G340070 |
| OH-1004 ID | LXL04_037726 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 78.500 |
| Protein coverage (%) | TK1151 72.789 / OH-1004 41.154Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G340070 |
|---|---|
| Location | Chr04:85921799-85922242 (-) |
| Description | Protein of unknown function |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0007155 cell adhesion Biological Process GO:0030198 extracellular matrix organization Biological Process GO:0031012 extracellular matrix Cellular Component GO:0030020 extracellular matrix structural constituent conferring tensile strength Molecular Function GO:0098631 cell adhesion mediator activity Molecular Function |
| KEGG gene cross-reference | cgr:2889767 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF13837Myb_DNA-bind_464-96 aaPF10545MADF_DNA_bdg67-92 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G340070 | PF13837 | Myb_DNA-bind_4 | 64 | 96 | 0.055 | 14.6 |
| TkA04G340070 | PF10545 | MADF_DNA_bdg | 67 | 92 | 0.028 | 15.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.