TkA04G339950 | RubberDandelionOmics

Gene overview

TkA04G339950

Reference: TK1151 Chr: Chr04 Coordinates: 85887307-85891076 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1823 bp · TkA04G339950|TK1151|cDNA

AGGACTTTTCCGCCGGAGATTTCCCTAAGGCAACTCTCCAATTAATTAAAGATGAATCGCCAAATCGGATACCAGATTAAAAGATGGAAGCTATGAAACCGGATATCAAAGCTCAAAGCAGCAATCGGCCAGGCTTGAAATCGATTTTGAATGCTTGATTCTCGGAATCATCAAACTATATCAGGTAAGTTCTTCCAACGGTTGGCAATTCCCATTTTTTGATTGCTCGATTCCGAAAATCACAGGCTTTGATTGCTTGA...

CDS

Download CDS FASTA

840 bp · TkA04G339950|TK1151|CDS

ATGGAACTTTTTGTTTCCAGACTAAAAAAGGTTTTAGTCTATGGAACCCTTTCAATCAGACGCAAACTAAACATACCTCAATGTCCTCAGAGATCTGACCCCTTGTTGGAAGAGATTGGGTTTGGATTCGACCCACTCAATGATGATTACAAAATTGTTTGGTTTTCGTGTGCCACAGGCAAAGAAAATTCATATGTTTATGCGATGAAGACAGGCGCTTGGTGTGAGATTGCTTCCCCTAAACCTCAGTTTACAAGATT...

Protein

Download Protein FASTA

279 aa · TkA04G339950|TK1151|PROTEIN

MELFVSRLKKVLVYGTLSIRRKLNIPQCPQRSDPLLEEIGFGFDPLNDDYKIVWFSCATGKENSYVYAMKTGAWCEIASPKPQFTRFSWVDSFSFNGVLHWEVGQSLSKPQDGSFFYIMTFDLSTHVFGMIPLPGPSYDWMTTNITTFKDSLALVSHGRKLNDTWIWIWRDDSWSVGFKLGMGKYPITGALQLQPAKNGDLLLTNYCEWILVYNPNTGVRSKVVEFSADSRLIDCCQYVETLHLLDIGETTSETTQVMKK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G339950`
TK1151 ID	TkA04G339950
OH-1004 ID	LXL04_037729
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 87.097 / OH-1004 66.033 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G339950

Location Chr04:85887307-85891076 (+)

Description Similar to At3g16210: Putative F-box protein At3g16210

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g16210`	Putative F-box protein At3g16210.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037729 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT3G06240

ath:AT3G16210

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.508

Rank 1 · TkA04G339950 · TK1151

Nucleus0.373

Rank 2 · TkA04G339950 · TK1151

Cell membrane0.151

Rank 3 · TkA04G339950 · TK1151

Endoplasmic reticulum0.099

Rank 4 · TkA04G339950 · TK1151

Lysosome / Vacuole0.055

Rank 5 · TkA04G339950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08268FBA_338-172 aa

PF24750b-prop_At3g26010-like49-173 aa

PF11178DUF2963111-125 aa

PF11178DUF2963208-235 aa

PF24750b-prop_At3g26010-like210-251 aa

PF08268FBA_3212-218 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G339950	`PF08268`	FBA_3	38	172	1.5e-11	44.6
TkA04G339950	`PF24750`	b-prop_At3g26010-like	49	173	1.6e-05	24.9
TkA04G339950	`PF11178`	DUF2963	111	125	0.0082	16.2
TkA04G339950	`PF11178`	DUF2963	208	235	0.0082	16.2
TkA04G339950	`PF24750`	b-prop_At3g26010-like	210	251	1.6e-05	24.9
TkA04G339950	`PF08268`	FBA_3	212	218	1.5e-11	44.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LU24`	Arabidopsis thaliana	sp\|Q9LU24\|FB145_ARATH Putative F-box protein At3g16210	30.400%	Swiss-Prot	Low

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