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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G333610
Reference: TK1151 Chr: Chr04 Coordinates: 84213598-84217793 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1806 bp · TkA04G333610|TK1151|cDNA

TTTGGATTACTATGCAAGAAAAGTGGCAGAGTGACACAGGGGTTTATAAATCGATTTACTTCTCTAGAGTTCTTACAACTGGTTTGGCGGCAATGGCGGAAGAATACTCTCTCGTTGATACTTCGAAGCTGCTCCAAGCAGCTTCCGACTTCTCGTTTGATCCTGGTACTCGTTCAGAAGCTGCCGTGAAGGAATTCCTCGGTTCTTTTCCTCTTCCGGTGATCATCAATGCTTTGCAAACCAAAGGAGATGTACCTGGT...

CDS

Download CDS FASTA

1683 bp · TkA04G333610|TK1151|CDS

ATGCAAGAAAAGTGGCAGAGTGACACAGGGGTTTATAAATCGATTTACTTCTCTAGAGTTCTTACAACTGGTTTGGCGGCAATGGCGGAAGAATACTCTCTCGTTGATACTTCGAAGCTGCTCCAAGCAGCTTCCGACTTCTCGTTTGATCCTGGTACTCGTTCAGAAGCTGCCGTGAAGGAATTCCTCGGTTCTTTTCCTCTTCCGGTGATCATCAATGAATGTGTTTATTGCAGTGCTTTGCAAACCAAAGGAGATGT...

Protein

Download Protein FASTA

560 aa · TkA04G333610|TK1151|PROTEIN

MQEKWQSDTGVYKSIYFSRVLTTGLAAMAEEYSLVDTSKLLQAASDFSFDPGTRSEAAVKEFLGSFPLPVIINECVYCSALQTKGDVPGLEDALIDCLEKIFRTKYGASLIPHFMPFIVVGLQAHSQRVKTLSCKTVSSLLENLEDPSGLATSLIKQNGVYPLLLNCLVDGDEQVAVAATDAIKNLACSQLGIEIIFPATPNETTDITNLAARCSSLGRVRVLALIVKLFSTSNAVATLVYNSNLLGLLEAEVRNANDTL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G333610
TK1151 IDTkA04G333610
OH-1004 IDLXL04_039546
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)98.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G333610
LocationChr04:84213598-84217793 (+)
DescriptionSimilar to Psmd5: 26S proteasome non-ATPase regulatory subunit 5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039546 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0043248 proteasome assembly Biological Process
GO:0070682 proteasome regulatory particle assembly Biological Process
GO:0005829 cytosol Cellular Component
GO:0008540 proteasome regulatory particle, base subcomplex Cellular Component
GO:0022624 proteasome accessory complex Cellular Component
KEGG gene cross-reference
bta:515021
mmu:66998
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.614
Rank 1 · TkA04G333610 · TK1151
Nucleus0.341
Rank 2 · TkA04G333610 · TK1151
Golgi apparatus0.115
Rank 3 · TkA04G333610 · TK1151
Lysosome / Vacuole0.073
Rank 4 · TkA04G333610 · TK1151
Endoplasmic reticulum0.069
Rank 5 · TkA04G333610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04078Rcd1104-209 aa
PF10521Tti2109-165 aa
PF02985HEAT114-144 aa
PF12717Cnd1116-234 aa
PF10508Proteasom_PSMB136-556 aa
PF25571TPR_CCP1_N139-158 aa
PF00514Arm153-187 aa
PF02985HEAT160-187 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G333610PF04078Rcd11042090.0001621.9
TkA04G333610PF10521Tti21091650.1812.0
TkA04G333610PF02985HEAT1141440.001519.3
TkA04G333610PF12717Cnd11162340.003318.2
TkA04G333610PF10508Proteasom_PSMB1365562.9e-1659.8
TkA04G333610PF25571TPR_CCP1_N1391580.01115.6
TkA04G333610PF00514Arm1531870.0001922.0
TkA04G333610PF02985HEAT1601870.001519.3
TkA04G333610PF14668RICTOR_V1832340.005217.7
TkA04G333610PF21360PylC-like_N1852130.01316.4
TkA04G333610PF25571TPR_CCP1_N2263180.01115.6
TkA04G333610PF04078Rcd12543260.0001621.9
TkA04G333610PF12717Cnd12543010.003318.2
TkA04G333610PF10521Tti22582970.1812.0
TkA04G333610PF14668RICTOR_V2733140.005217.7
TkA04G333610PF00514Arm2813040.0001922.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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