TkA04G324400 | RubberDandelionOmics

Gene overview

TkA04G324400

Reference: TK1151 Chr: Chr04 Coordinates: 81973812-81975240 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

624 bp · TkA04G324400|TK1151|cDNA

ATGGGTGCAGCTGGGTCGAAACGCGAGAAAGCTTTAGGCGACCAATTTCCAGAAGGCGAACGATACTTCGGTTCACACTTGTGCGAGAAATTGCTGTCGGAGACGCCGCACACTATTTTAGCCGTCGACGTGTACAATGACAAGATCAAACACCTTCTCGAGCCGGATTCCCTTCCTTGGGCCGGTCGCATCCAGTTCCACCGCCTCAACATTAAGAATGATTCGCGCCTTGAAGGTCTCATCAAGTGCTCCGATCTGAG...

CDS

Download CDS FASTA

624 bp · TkA04G324400|TK1151|CDS

ATGGGTGCAGCTGGGTCGAAACGCGAGAAAGCTTTAGGCGACCAATTTCCAGAAGGCGAACGATACTTCGGTTCACACTTGTGCGAGAAATTGCTGTCGGAGACGCCGCACACTATTTTAGCCGTCGACGTGTACAATGACAAGATCAAACACCTTCTCGAGCCGGATTCCCTTCCTTGGGCCGGTCGCATCCAGTTCCACCGCCTCAACATTAAGAATGATTCGCGCCTTGAAGGTCTCATCAAGTGCTCCGATCTGAG...

Protein

Download Protein FASTA

207 aa · TkA04G324400|TK1151|PROTEIN

MGAAGSKREKALGDQFPEGERYFGSHLCEKLLSETPHTILAVDVYNDKIKHLLEPDSLPWAGRIQFHRLNIKNDSRLEGLIKCSDLSEEVIQLSCYAVQLLNTPLNCASFTSRLVKYMGKPSAAIFPKTAPYDRIPLTKSLKKIHPLAFSGQLRNRAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVQKDVSGNRVFSK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G324400`
TK1151 ID	TkA04G324400
OH-1004 ID	LXL04_017298
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	94.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G324400

Location Chr04:81973812-81975240 (-)

Description Similar to AXS2: UDP-D-apiose/UDP-D-xylose synthase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08200`	Together with AXS1, catalyzes the conversion of UDP-D- glucuronate into a mixture of UDP-D-apiose (UDP-Api) as the main product and UDP-D-xylose to a lesser extent, via a cycle of oxidation and reduction.	UDP-Api/UDP-Xyl synthases affect plant development by controlling the content of UDP-Api to regulate the RG-II-borate complex.2020 · DOI: 10.1111/tpj.14921
`At2g27860`	Together with AXS2, catalyzes the conversion of UDP-D- glucuronate into a mixture of UDP-D-apiose (UDP-Api) as the main product and UDP-D-xylose to a lesser extent, via a cycle of oxidation and reduction.	The biosynthesis of the branched-chain sugar d-apiose in plants: functional cloning and characterization of a UDP-d-apiose/UDP-d-xylose synthase from Arabidopsis.2003 · DOI: 10.1046/j.1365-313x.2003.01841.x Deciphering the enzymatic mechanism of sugar ring contraction in UDP-apiose biosynthesis.2019 · DOI: 10.1038/s41929-019-0382-8 UDP-Api/UDP-Xyl synthases affect plant development by controlling the content of UDP-Api to regulate the RG-II-borate complex.2020 · DOI: 10.1111/tpj.14921

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0969100`	Catalyzes the conversion of UDP-D-glucuronate to a mixture of UDP-D-apiose and UDP-D-xylose.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017298 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009226 nucleotide-sugar biosynthetic process Biological Process

GO:0016579 protein deubiquitination Biological Process

GO:0031647 regulation of protein stability Biological Process

GO:0033320 UDP-D-xylose biosynthetic process Biological Process

GO:0033352 UDP-D-apiose biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

KEGG gene cross-reference

ath:AT1G08200

ath:AT2G22310

ath:AT2G27860

ath:AT4G39910

dosa:Os01g0969100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.362

Rank 1 · TkA04G324400 · TK1151

Nucleus0.211

Rank 2 · TkA04G324400 · TK1151

Extracellular0.181

Rank 3 · TkA04G324400 · TK1151

Mitochondrion0.176

Rank 4 · TkA04G324400 · TK1151

Peroxisome0.075

Rank 5 · TkA04G324400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01370Epimerase22-178 aa

PF16363GDP_Man_Dehyd22-94 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G324400	`PF01370`	Epimerase	22	178	4.2e-08	33.6
TkA04G324400	`PF16363`	GDP_Man_Dehyd	22	94	0.0057	16.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SGE0`	Arabidopsis thaliana	sp\|Q9SGE0\|AXS2_ARATH UDP-D-apiose/UDP-D-xylose synthase 2	50.700%	Swiss-Prot	High
`Q9ZUY6`	Arabidopsis thaliana	sp\|Q9ZUY6\|AXS1_ARATH UDP-D-apiose/UDP-D-xylose synthase 1	50.700%	Swiss-Prot	High
`Q8S9Z2`	Oryza sativa subsp. japonica	sp\|Q8S9Z2\|AXS_ORYSJ UDP-D-apiose/UDP-D-xylose synthase	46.100%	Swiss-Prot	Medium

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