TkA04G324370 | RubberDandelionOmics

Gene overview

TkA04G324370

Reference: TK1151 Chr: Chr04 Coordinates: 81968649-81971407 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1453 bp · TkA04G324370|TK1151|cDNA

ATTTTGGCCATCCCTATGTATTTCACTCGGATCACACACTGGACACACTTCCCATCCTCTGCAATCCTTCTCCGATTTCCCTTGCACGCCTTCTTCTCCCAAGCGGCCGCCACCATACCTTCCCCCTCCATCAACCCATACCTCTATCTTCATAGGTTACAGGCAACCTTTCGCCTCCATCAACCCATCCCTGATCAGTTCAAATGGCGCCATCTTCAACCTTCCCCCGACACATTTACCTCTCTCTCTCTCTCTCTCTC...

CDS

Download CDS FASTA

393 bp · TkA04G324370|TK1151|CDS

ATGAAGTTCTGCATGTTTAATGATGACATACAGGGAACTGCTGGTGTTGCATTAGCTGGATTACTTGGAACTGTCAGAGCACAAGGTCTGCCATTGTCAGAGTTTGTAAACCAAAAGATTGTTGTTGTTGGAGCTGGAAGTTATGTGTTACAGTATGTGGTGGAGTTGCAAAGACGGTTGAAAGCTGTGGGACCCGGTGATGTTTGGCAGTCAGAAGGTGCGGATTTGAATAGGAGAATTGGGAACATGTCTTTTGGTGA...

Protein

Download Protein FASTA

130 aa · TkA04G324370|TK1151|PROTEIN

MKFCMFNDDIQGTAGVALAGLLGTVRAQGLPLSEFVNQKIVVVGAGSYVLQYVVELQRRLKAVGPGDVWQSEGADLNRRIGNMSFGDMFGKNSPDYLPFEFRALEVALEAACTFLDTQVGLFLTQQLHHL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G324370`
TK1151 ID	TkA04G324370
OH-1004 ID	LXL04_012146
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	96.000
Protein coverage (%)	TK1151 38.462 / OH-1004 41.322 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G324370

Location Chr04:81968649-81971407 (-)

Description Similar to NAD-dependent malic enzyme 59 kDa isoform, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g16010`	Magnesium transporter that may mediate the influx of magnesium.	No verified direct reference in this release
`At4g00570`	Involved in the regulation of sugars and amino acids metabolisms during the night period.	Arabidopsis NAD-malic enzyme functions as a homodimer and heterodimer and has a major impact on nocturnal metabolism.2008 · DOI: 10.1104/pp.107.114975
`At1g80900`	High-affinity magnesium transporter that mediates the influx of magnesium.	A novel family of magnesium transport genes in Arabidopsis.2001 · DOI: 10.1105/tpc.010352 Overexpression of an Arabidopsis magnesium transport gene, AtMGT1, in Nicotiana benthamiana confers Al tolerance.2006 · DOI: 10.1093/jxb/erl201

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012146 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006108 malate metabolic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0050897 cobalt ion binding Molecular Function

GO:0051287 NAD binding Molecular Function

KEGG gene cross-reference

ath:AT2G13560

ath:AT4G00570

sot:102598070

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.399

Rank 1 · TkA04G324370 · TK1151

Cytoplasm0.158

Rank 2 · TkA04G324370 · TK1151

Peroxisome0.137

Rank 3 · TkA04G324370 · TK1151

Mitochondrion0.126

Rank 4 · TkA04G324370 · TK1151

Plastid0.078

Rank 5 · TkA04G324370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03949Malic_M10-47 aa

PF22099MRS2-like92-122 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G324370	`PF03949`	Malic_M	10	47	5.6e-07	29.8
TkA04G324370	`PF22099`	MRS2-like	92	122	0.12	12.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9S9N4`	Arabidopsis thaliana	sp\|Q9S9N4\|MRS21_ARATH Magnesium transporter MRS2-1	62.200%	Swiss-Prot	Medium
`Q8L7K9`	Arabidopsis thaliana	sp\|Q8L7K9\|MAO2_ARATH NAD-dependent malic enzyme 2, mitochondrial	91.300%	Swiss-Prot	Low
`Q9SAH0`	Arabidopsis thaliana	sp\|Q9SAH0\|MRS2A_ARATH Magnesium transporter MRS2-10	59.500%	Swiss-Prot	Medium

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