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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G314550
Reference: TK1151 Chr: Chr04 Coordinates: 79267275-79269879 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1592 bp · TkA04G314550|TK1151|cDNA

TTTAAACTAGAAGGTACATTCACGAAACCAAATATAGGTTTTAGCCTCTTTCACCAAACAACGTTTTAACCAACACGGTTGATTTTCGCCCTCTTCGCCGGTTGATCCGCTGTGCTCAGCTGAACTGAAGTTTATATATCACGGTAGTTTCCGGCAGCCGCTTACGAAATCAGCAGTACAGTTTCAATGGCGAAGATAACATTAGGCTGCGAACCAGTCATCGGATCACTAACCCCGTCGAAGAAGAGAGATTACAGAGT...

CDS

Download CDS FASTA

1113 bp · TkA04G314550|TK1151|CDS

ATGGCGAAGATAACATTAGGCTGCGAACCAGTCATCGGATCACTAACCCCGTCGAAGAAGAGAGATTACAGAGTCACCAACAGGCTACAGGAAGGCAAACGCCCAATTTACGCCGTCGTTTTCAACTTCATCGACTCTCGTTATTACAACGTCTTCGCCACTGTCGGTGGTAATCGCGTTACGGTATACCAATGCCTTGAAGGCGGCGTAATTGCTGTACTACAGTCCTACATTGACGAAGATAAAGACGAGTCGTTCTA...

Protein

Download Protein FASTA

370 aa · TkA04G314550|TK1151|PROTEIN

MAKITLGCEPVIGSLTPSKKRDYRVTNRLQEGKRPIYAVVFNFIDSRYYNVFATVGGNRVTVYQCLEGGVIAVLQSYIDEDKDESFYTVSWACDANGTPLLVAGGINGIIRVIDAGNEKIHKSFVGHGDSVNEIRTQPLRPSLVLSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVERSFTWEGPPSQFPTKYVQFPVLIASIHTNYVDCNRWLGDFILSKSVDN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G314550
TK1151 IDTkA04G314550
OH-1004 IDLXL04_037505
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G314550
LocationChr04:79267275-79269879 (+)
DescriptionSimilar to FIE2: Polycomb group protein FIE1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g20740 Polycomb group (PcG) protein.
Polycomb group genes control pattern formation in plant seed.2001 · DOI: 10.1016/s0960-9822(01)00072-0

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0137100 Polycomb group (PcG) protein.
Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis.2013 · DOI: 10.1371/journal.pgen.1003322
OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development.2014 · DOI: 10.1111/nph.12472
Os08g0137250 Polycomb group (PcG) protein.
Identification and characterization of an epi-allele of FIE1 reveals a regulatory linkage between two epigenetic marks in rice.2012 · DOI: 10.1105/tpc.112.102269
Imprinted gene OsFIE1 modulates rice seed development by influencing nutrient metabolism and modifying genome H3K27me3.2016 · DOI: 10.1111/tpj.13202
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037505 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0009409 response to cold Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0009908 flower development Biological Process
GO:0009910 negative regulation of flower development Biological Process
GO:0009960 endosperm development Biological Process
GO:0010048 vernalization response Biological Process
GO:0010231 maintenance of seed dormancy Biological Process
GO:0030154 cell differentiation Biological Process
GO:0031507 heterochromatin formation Biological Process
GO:0045815 transcription initiation-coupled chromatin remodeling Biological Process
KEGG gene cross-reference
ath:AT3G20740
dosa:Os08g0137100
dosa:Os08g0137250
osa:9271694
zma:542075
zma:542076
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.534
Rank 1 · TkA04G314550 · TK1151
Nucleus0.426
Rank 2 · TkA04G314550 · TK1151
Lysosome / Vacuole0.099
Rank 3 · TkA04G314550 · TK1151
Cell membrane0.090
Rank 4 · TkA04G314550 · TK1151
Golgi apparatus0.066
Rank 5 · TkA04G314550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23775Beta-prop_RIG_2nd11-206 aa
PF23409Beta-prop_EML30-158 aa
PF24807WD40_CDC20-Fz41-207 aa
PF24805EIF3I47-73 aa
PF23381Beta-prop_IFT122_1st51-75 aa
PF23215WD_LRWD151-159 aa
PF23414Beta-prop_EML_252-205 aa
PF23756Beta-prop_HPS559-121 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G314550PF23775Beta-prop_RIG_2nd112062e-0628.2
TkA04G314550PF23409Beta-prop_EML301584.2e-1040.3
TkA04G314550PF24807WD40_CDC20-Fz412072.8e-1866.9
TkA04G314550PF24805EIF3I47731.2e-0731.9
TkA04G314550PF23381Beta-prop_IFT122_1st51754.5e-2072.8
TkA04G314550PF23215WD_LRWD1511590.06412.9
TkA04G314550PF23414Beta-prop_EML_2522054.6e-0833.5
TkA04G314550PF23756Beta-prop_HPS5591210.1811.7
TkA04G314550PF12894ANAPC4_WD40801300.02415.6
TkA04G314550PF29037DSE1_N811321.1e-0525.4
TkA04G314550PF25171Beta-prop_WDR36-Utp21_1st831575.2e-0626.8
TkA04G314550PF25174Beta-prop_THOC3851645.7e-2382.0
TkA04G314550PF23342WDR90_beta-prop_4th851596.1e-0523.0
TkA04G314550PF24105Beta-prop_CAF1B_HIR1871616.4e-0832.7
TkA04G314550PF24782WD40_MABP1-WDR62_2nd891351.4e-0525.0
TkA04G314550PF23393Beta-prop_WDR90_POC16_2nd901382.5e-0524.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LT47Arabidopsis thalianasp|Q9LT47|FIE_ARATH Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM74.700%Swiss-ProtHigh
Q6ZJX0Oryza sativa subsp. japonicasp|Q6ZJX0|FIE2_ORYSJ Polycomb group protein FIE178.200%Swiss-ProtHigh
Q6ZJW8Oryza sativa subsp. japonicasp|Q6ZJW8|FIE1_ORYSJ Polycomb group protein FIE167.700%Swiss-ProtHigh

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