TkA04G313670 | RubberDandelionOmics

Gene overview

TkA04G313670

Reference: TK1151 Chr: Chr04 Coordinates: 79003492-79011042 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1128 bp · TkA04G313670|TK1151|cDNA

ATGGGGTGGAAAACCGGATTGATTGGAGAATCAAATGCCATGGGATTGTTTCATGAGTTTGTTGAAGACAAAGAAGTCAGATTGATTGGAGTTGAGGGTACGAGTTTTTTGCTTGATAGTGGAAGACATGCACACGAGGTTGGGGTGCTTGATGGAGTCATGAGATATTTCGAACAAGATGATGGTCAAATTATTGACCTTCTTCCGATTACTACGGGGATGGAGCAAAGTCACATGATTCACGGTTCGCTTCGGTACGG...

CDS

Download CDS FASTA

1128 bp · TkA04G313670|TK1151|CDS

ATGGGGTGGAAAACCGGATTGATTGGAGAATCAAATGCCATGGGATTGTTTCATGAGTTTGTTGAAGACAAAGAAGTCAGATTGATTGGAGTTGAGGGTACGAGTTTTTTGCTTGATAGTGGAAGACATGCACACGAGGTTGGGGTGCTTGATGGAGTCATGAGATATTTCGAACAAGATGATGGTCAAATTATTGACCTTCTTCCGATTACTACGGGGATGGAGCAAAGTCACATGATTCACGGTTCGCTTCGGTACGG...

Protein

Download Protein FASTA

375 aa · TkA04G313670|TK1151|PROTEIN

MGWKTGLIGESNAMGLFHEFVEDKEVRLIGVEGTSFLLDSGRHAHEVGVLDGVMRYFEQDDGQIIDLLPITTGMEQSHMIHGSLRYGYVGTHEYMIDTHKVFSTGERENTIHSLEVPLFLQRHAFEARIYAENVPKGFLPATGVLEYYRPILVLETVRVETGVEEGDTVSMHYDPMIAKLVVWGENRASALIKLKDSLSKFQYSNALRFYILTAYGCFRCPALPQEEEDGRDAVSLGGSRWSTAVDSHNSGGESCLLDSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G313670`
TK1151 ID	TkA04G313670
OH-1004 ID	LXL04_001026
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	95.000
Protein coverage (%)	TK1151 21.333 / OH-1004 10.989 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G313670

Location Chr04:79003492-79011042 (+)

Description Similar to MCCA: Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g03090`	Biotin-attachment subunit of the 3-methylcrotonyl-CoA carboxylase, an enzyme that catalyzes the conversion of 3-methylcrotonyl-CoA to 3-methylglutaconyl-CoA, a critical step for leucine and isovaleric acid catabolism.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0605800`	Biotin-attachment subunit of the 3-methylcrotonyl-CoA carboxylase, an enzyme that catalyzes the conversion of 3-methylcrotonyl-CoA to 3-methylglutaconyl-CoA, a critical step for leucine and isovaleric acid catabolism.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001026 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006552 L-leucine catabolic process Biological Process

GO:0006768 biotin metabolic process Biological Process

GO:0009083 branched-chain amino acid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:1905202 methylcrotonoyl-CoA carboxylase complex Cellular Component

GO:0004075 biotin carboxylase activity Molecular Function

GO:0004485 methylcrotonoyl-CoA carboxylase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G03090

dosa:Os12g0605800

hsa:56922

rno:294972

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.461

Rank 1 · TkA04G313670 · TK1151

Nucleus0.376

Rank 2 · TkA04G313670 · TK1151

Mitochondrion0.130

Rank 3 · TkA04G313670 · TK1151

Cell membrane0.088

Rank 4 · TkA04G313670 · TK1151

Endoplasmic reticulum0.069

Rank 5 · TkA04G313670 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02785Biotin_carb_C126-202 aa

PF02785Biotin_carb_C278-296 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G313670	`PF02785`	Biotin_carb_C	126	202	2e-22	80.1
TkA04G313670	`PF02785`	Biotin_carb_C	278	296	2e-22	80.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q42523`	Arabidopsis thaliana	sp\|Q42523\|MCCA_ARATH Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	78.400%	Swiss-Prot	Low
`Q2QMG2`	Oryza sativa subsp. japonica	sp\|Q2QMG2\|MCCA_ORYSJ Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	77.300%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card