Gene Card
Gene overview
cDNA / CDS / Protein Sequences
390 bp · TkA04G274410|TK1151|cDNA
ATGAAGAGTGTGTTAGGAGGGGTTATATGGGTGTTACTTGATTCTTCAGAAAATGTGTCAGAAGATTCCGGAAGAGAAGAAAGCCTAGAAAACAAAAACCAGGACCGTCTTTTCTCCATCTATCATGCAAGTGAGCAGAGCATAGAACATATCTACTCGGCCATTGAGAAAGATGATGGCACAAAAGCAGAGAGATTATCATGTGGACCTTTTACTCCCAACATGGACCAGCTCAGCTGGGAAGAGGTACCGGGTTATAG...
390 bp · TkA04G274410|TK1151|CDS
ATGAAGAGTGTGTTAGGAGGGGTTATATGGGTGTTACTTGATTCTTCAGAAAATGTGTCAGAAGATTCCGGAAGAGAAGAAAGCCTAGAAAACAAAAACCAGGACCGTCTTTTCTCCATCTATCATGCAAGTGAGCAGAGCATAGAACATATCTACTCGGCCATTGAGAAAGATGATGGCACAAAAGCAGAGAGATTATCATGTGGACCTTTTACTCCCAACATGGACCAGCTCAGCTGGGAAGAGGTACCGGGTTATAG...
Protein
Download Protein FASTA129 aa · TkA04G274410|TK1151|PROTEIN
MKSVLGGVIWVLLDSSENVSEDSGREESLENKNQDRLFSIYHASEQSIEHIYSAIEKDDGTKAERLSCGPFTPNMDQLSWEEVPGYSPSWGRGQEFYSWQLQRGGIFPRTVTSDQVRGLVDPVTAKKPT
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G274410 |
|---|---|
| TK1151 ID | TkA04G274410 |
| OH-1004 ID | LXL04_031859 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 51.300 |
| Protein coverage (%) | TK1151 41.860 / OH-1004 2.495Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G274410 |
|---|---|
| Location | Chr04:69329815-69333349 (-) |
| Description | Similar to ATM: Serine/threonine-protein kinase ATM |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000045 autophagosome assembly Biological Process GO:0000077 DNA damage checkpoint signaling Biological Process GO:0000425 pexophagy Biological Process GO:0000723 telomere maintenance Biological Process GO:0000724 double-strand break repair via homologous recombination Biological Process GO:0000729 DNA double-strand break processing Biological Process GO:0001666 response to hypoxia Biological Process GO:0002376 immune system process Biological Process GO:0006281 DNA repair Biological Process GO:0006302 double-strand break repair Biological Process GO:0006303 double-strand break repair via nonhomologous end joining Biological Process GO:0006325 chromatin organization Biological Process |
| KEGG gene cross-reference | afm:AFUA_5G12660 hsa:472 mmu:11920 ssc:100101922 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.