TkA04G274070 | RubberDandelionOmics

Gene overview

TkA04G274070

Reference: TK1151 Chr: Chr04 Coordinates: 69249506-69250405 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

435 bp · TkA04G274070|TK1151|cDNA

ATGATTAAAGAATTGGATGAGGACCGACAAGAGTCCCAAGATCCTGAGGTGGAGTTTGCGATAGCACGGGCGGTTCGGGAATGGAAGTTCTGCTGGAAATTGTTCAGGGTTGGCACAGAAATGTTGGCTGTATTTCAGAAATGGTTCCTACAATGTAAAAAAATGGCGTTTGCGAGACGATTTAAAGTCAAACCAGGAGCAGTTAGTCGCTGTTCTGCTGCAAAATACGAGGAAACCGAACCGCCTTACTTAAACTCGGG...

CDS

Download CDS FASTA

435 bp · TkA04G274070|TK1151|CDS

ATGATTAAAGAATTGGATGAGGACCGACAAGAGTCCCAAGATCCTGAGGTGGAGTTTGCGATAGCACGGGCGGTTCGGGAATGGAAGTTCTGCTGGAAATTGTTCAGGGTTGGCACAGAAATGTTGGCTGTATTTCAGAAATGGTTCCTACAATGTAAAAAAATGGCGTTTGCGAGACGATTTAAAGTCAAACCAGGAGCAGTTAGTCGCTGTTCTGCTGCAAAATACGAGGAAACCGAACCGCCTTACTTAAACTCGGG...

Protein

Download Protein FASTA

144 aa · TkA04G274070|TK1151|PROTEIN

MIKELDEDRQESQDPEVEFAIARAVREWKFCWKLFRVGTEMLAVFQKWFLQCKKMAFARRFKVKPGAVSRCSAAKYEETEPPYLNSGGALSLLLAFSVEPAEGILLIVESLTMEANESDNINITQNALTHFDGGRIRLFTSVEA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G274070`
TK1151 ID	TkA04G274070
OH-1004 ID	LXL04_034874
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	82.100
Protein coverage (%)	TK1151 100.000 / OH-1004 64.368 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G274070

Location Chr04:69249506-69250405 (+)

Description Similar to Os09g0247700: Auxin transport protein BIG

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g02260`	Required for auxin efflux and polar auxin transport (PAT) influencing auxin-mediated developmental responses (e.g. cell elongation, apical dominance, lateral root production, inflorescence architecture, general growth and development).	BIG: a calossin-like protein required for polar auxin transport in Arabidopsis.2001 · DOI: 10.1101/gad.905201 Mutations in the huge Arabidopsis gene BIG affect a range of hormone and light responses.2003 · DOI: 10.1046/j.1365-313x.2003.01779.x The auxin transport inhibitor response 3 (tir3) allele of BIG and auxin transport inhibitors affect the gibberellin status of Arabidopsis.2005 · DOI: 10.1111/j.1365-313x.2004.02287.x CRM1/BIG-mediated auxin action regulates Arabidopsis inflorescence development.2007 · DOI: 10.1093/pcp/pcm094 Arabidopsis mutants define downstream branches in the phototransduction pathway.1994 · DOI: 10.1101/gad.8.3.339 Reduced naphthylphthalamic acid binding in the tir3 mutant of Arabidopsis is associated with a reduction in polar auxin transport and diverse morphological defects.1997 · DOI: 10.1105/tpc.9.5.745

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0247700`	Required for auxin efflux and polar auxin transport (PAT) influencing auxin-mediated developmental responses (e.g. cell elongation, apical dominance, lateral root production, inflorescence architecture, general growth and development) (By similarity).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034874 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009620 response to fungus Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009926 auxin polar transport Biological Process

GO:0010311 lateral root formation Biological Process

GO:0048281 inflorescence morphogenesis Biological Process

GO:0048364 root development Biological Process

GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway Biological Process

GO:0140455 cytoplasm protein quality control Biological Process

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT3G02260

dosa:Os09g0247700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.370

Rank 1 · TkA04G274070 · TK1151

Nucleus0.367

Rank 2 · TkA04G274070 · TK1151

Mitochondrion0.217

Rank 3 · TkA04G274070 · TK1151

Cell membrane0.080

Rank 4 · TkA04G274070 · TK1151

Endoplasmic reticulum0.049

Rank 5 · TkA04G274070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30838UBR4_TPR98-130 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G274070	`PF30838`	UBR4_TPR	98	130	0.00086	19.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SRU2`	Arabidopsis thaliana	sp\|Q9SRU2\|BIG_ARATH Auxin transport protein BIG	50.400%	Swiss-Prot	High
`B9G2A8`	Oryza sativa subsp. japonica	sp\|B9G2A8\|BIG_ORYSJ Auxin transport protein BIG	48.200%	Swiss-Prot	Medium

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