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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G273770
Reference: TK1151 Chr: Chr04 Coordinates: 69150248-69154125 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

867 bp · TkA04G273770|TK1151|cDNA

ATGGGACACCTGGCGACTCAAAAGTGTATCGGTTTTACCTTTGCTTCATGCTTTGGAAGGGGGAATATGAAATCGGAAAAAGTCATCGGGTTGCGGAAATCCACACAAACGGCTCGCGTTAATGAAACGAAAAGGGATGCTTCAGCAACAGCAGTCGGTGAGCAACAATCTGATGGAGAAACTAATGATGTACTTTTAGTTACAACAGAGGATAGCATGGAACAAATGAGGAATGTTTATTCAGATGTTAATGCCACAAA...

CDS

Download CDS FASTA

867 bp · TkA04G273770|TK1151|CDS

ATGGGACACCTGGCGACTCAAAAGTGTATCGGTTTTACCTTTGCTTCATGCTTTGGAAGGGGGAATATGAAATCGGAAAAAGTCATCGGGTTGCGGAAATCCACACAAACGGCTCGCGTTAATGAAACGAAAAGGGATGCTTCAGCAACAGCAGTCGGTGAGCAACAATCTGATGGAGAAACTAATGATGTACTTTTAGTTACAACAGAGGATAGCATGGAACAAATGAGGAATGTTTATTCAGATGTTAATGCCACAAA...

Protein

Download Protein FASTA

288 aa · TkA04G273770|TK1151|PROTEIN

MGHLATQKCIGFTFASCFGRGNMKSEKVIGLRKSTQTARVNETKRDASATAVGEQQSDGETNDVLLVTTEDSMEQMRNVYSDVNATNETVMQIEQRRFQSRVCPESPAGISGRNSHSWFNNSGSVFSGISTWWHDKRKTRCMFRLDMVENQSTNALAAATSARDSPPMTLTYRLQLILAPDWYWGESQTGYMSASFCIQMVVAASVFTWIQVKPLQLTRLVHGRLVTKHLRHGLIHFLCDDTILSSKADGTGKRIGPSRA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G273770
TK1151 IDTkA04G273770
OH-1004 IDLXL04_034872
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)72.200
Protein coverage (%)TK1151 100.000 / OH-1004 38.303
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G273770
LocationChr04:69150248-69154125 (+)
DescriptionSimilar to BIG: Auxin transport protein BIG
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_034872 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0009620 response to fungus Biological Process
GO:0009640 photomorphogenesis Biological Process
GO:0009733 response to auxin Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0009926 auxin polar transport Biological Process
GO:0010311 lateral root formation Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
GO:0048281 inflorescence morphogenesis Biological Process
KEGG gene cross-reference
ath:AT1G24190
ath:AT1G70060
ath:AT3G01320
ath:AT3G02260
dosa:Os09g0247700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.378
Rank 1 · TkA04G273770 · TK1151
Nucleus0.337
Rank 2 · TkA04G273770 · TK1151
Mitochondrion0.230
Rank 3 · TkA04G273770 · TK1151
Cell membrane0.134
Rank 4 · TkA04G273770 · TK1151
Golgi apparatus0.071
Rank 5 · TkA04G273770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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