TkA04G272710 | RubberDandelionOmics

Gene overview

TkA04G272710

Reference: TK1151 Chr: Chr04 Coordinates: 68909894-68913332 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2510 bp · TkA04G272710|TK1151|cDNA

GTTTGAGGAGTATAAATGTCATTGTTCGGATCTCCCACTTGATGAAAATTCAACTTGCCTTAGGAAAGAGAGAAAAAAGGGGTTGGTGTTGTGTGGAACGACGGAGATGGTGATGAAGAAGAAAGGACACCACCCTAATCTCATCGCATTCAAAAATCCTCTTCCCCACCTTCACTAACCCAACCCAAACCTTAGTGTATTTTGCACTTTCTTTCTTTTTCGTATCCAATTCCCTCTTTTTTCCTTTATCTTCTTTTTAT...

CDS

Download CDS FASTA

2004 bp · TkA04G272710|TK1151|CDS

ATGGATGTTGTAGCAGTTCAAGCCTCGGTTTGGAACAGTTCATTATATAAGACACTTCCGAAGCCTTCACTTTTCAGATTATCTACACGTAGGTGCCCTAAAATCTTACATTGTACAGCTGGAGCTACTAGATTCAGCGAGAGGGTTATTTTCCGGAACGTTTTTGATTCCAGATTTTCAAGAAGTAGTAGTAGTTATAGTGTTGTTCGAGAGGACAGAGGGCTGAGATCTGTTTGGATTAAAACTAGTAGCGTGGACAA...

Protein

Download Protein FASTA

667 aa · TkA04G272710|TK1151|PROTEIN

MDVVAVQASVWNSSLYKTLPKPSLFRLSTRRCPKILHCTAGATRFSERVIFRNVFDSRFSRSSSSYSVVREDRGLRSVWIKTSSVDNHSTAPRVDFHFLEILVKKGLVLAAVSCGVLLLRCRGVHAAEGVLNGGLEQIKLSLTNSLPKVLMVVKVLKEQGLILAALFGLSAFFSMAETSITTLWPWKVRELAEKESENGVFKMLRNDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAVLLLTEI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G272710`
TK1151 ID	TkA04G272710
OH-1004 ID	LXL04_037327
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G272710

Location Chr04:68909894-68913332 (-)

Description Similar to CBSDUFCH2: DUF21 domain-containing protein At1g55930, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g55930`	DUF21 domain-containing protein At1g55930, chloroplastic.	No verified direct reference in this release
`At3g13070`	Putative DUF21 domain-containing protein At3g13070, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037327 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009706 chloroplast inner membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0050660 flavin adenine dinucleotide binding Molecular Function

KEGG gene cross-reference

ath:AT1G55930

ath:AT3G13070

mbo:BQ2027_MB2387C

mtc:MT2435

mtu:Rv2366c

mtv:RVBD_2366c

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.953

Rank 1 · TkA04G272710 · TK1151

Mitochondrion0.029

Rank 2 · TkA04G272710 · TK1151

Golgi apparatus0.028

Rank 3 · TkA04G272710 · TK1151

Endoplasmic reticulum0.024

Rank 4 · TkA04G272710 · TK1151

Cytoplasm0.020

Rank 5 · TkA04G272710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01595CNNM161-338 aa

PF21917NMB0537_N318-347 aa

PF00571CBS353-411 aa

PF03471CorC_HlyC379-394 aa

PF00571CBS421-476 aa

PF03471CorC_HlyC499-609 aa

PF28977DUF8489570-632 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G272710	`PF01595`	CNNM	161	338	2.8e-48	164.7
TkA04G272710	`PF21917`	NMB0537_N	318	347	0.82	10.1
TkA04G272710	`PF00571`	CBS	353	411	6.1e-14	52.8
TkA04G272710	`PF03471`	CorC_HlyC	379	394	2e-14	54.0
TkA04G272710	`PF00571`	CBS	421	476	6.1e-14	52.8
TkA04G272710	`PF03471`	CorC_HlyC	499	609	2e-14	54.0
TkA04G272710	`PF28977`	DUF8489	570	632	0.25	12.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84R21`	Arabidopsis thaliana	sp\|Q84R21\|Y1559_ARATH DUF21 domain-containing protein At1g55930, chloroplastic	72.200%	Swiss-Prot	High
`Q9LK65`	Arabidopsis thaliana	sp\|Q9LK65\|Y3307_ARATH Putative DUF21 domain-containing protein At3g13070, chloroplastic	79.000%	Swiss-Prot	High

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