TkA04G263020 | RubberDandelionOmics

Gene overview

TkA04G263020

Reference: TK1151 Chr: Chr04 Coordinates: 66511625-66517145 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1933 bp · TkA04G263020|TK1151|cDNA

CTAAATCTGCAAAACCGACATTTTTAAGAACTGTCGAAAAAAACATGGCGTGTGATGGTTGCCTTCATTGAAGTCCTTTTCTGAGTTTCTACCTTCTGTACCTGACAAAAATGTCAGGCCTAGAAGGAGCTGATTATTTCGATGAAATCAAAGAAAGGAGGTTAGATTTCGATAATTCTGAAGACGAAAGACGACGATCTAAAATTGGAGCTTTAAGGAAGAAAGCAATAAATGCTTCAAACAAATTCACTCACTCTCTC...

CDS

Download CDS FASTA

1623 bp · TkA04G263020|TK1151|CDS

ATGTCAGGCCTAGAAGGAGCTGATTATTTCGATGAAATCAAAGAAAGGAGGTTAGATTTCGATAATTCTGAAGACGAAAGACGACGATCTAAAATTGGAGCTTTAAGGAAGAAAGCAATAAATGCTTCAAACAAATTCACTCACTCTCTCAAGAAAAGAGGAAAGAGAAAAGTCGATTACAGAGTTTCTTCAGTATCAATTGAGGATGTACGTGATGCAAGTGAAGAAAGAGCTGTTCATGAACTCCGACAAAAGCTTCT...

Protein

Download Protein FASTA

540 aa · TkA04G263020|TK1151|PROTEIN

MSGLEGADYFDEIKERRLDFDNSEDERRRSKIGALRKKAINASNKFTHSLKKRGKRKVDYRVSSVSIEDVRDASEERAVHELRQKLLDKDLLPERHDDYHTLLRFLKARDFNIERTTRMWAEMLNWRKEYGTDTILEDFEFEELEEVLQYYPQGYHGVDKEGRPVYIERLGKAHPSKLMRITTIERYLKYHVQEFERAFSEKFPACSIAAKRQICSTTTILDVQGLGLKNFTPSAASILGAMAKVDNSYYPETLHRMFVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G263020`
TK1151 ID	TkA04G263020
OH-1004 ID	LXL04_037240
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.400
Protein coverage (%)	TK1151 99.444 / OH-1004 70.302 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G263020

Location Chr04:66511625-66517145 (-)

Description Similar to SFH13: Phosphatidylinositol/phosphatidylcholine transfer protein SFH13

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g55690`	Required for transport of secretory proteins from the Golgi complex.	No verified direct reference in this release
`At5g56160`	Required for transport of secretory proteins from the Golgi complex.	No verified direct reference in this release
`At3g24840`	Required for transport of secretory proteins from the Golgi complex.	No verified direct reference in this release
`At4g39170`	Required for transport of secretory proteins from the Golgi complex.	No verified direct reference in this release
`At2g21520`	Required for transport of secretory proteins from the Golgi complex.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037240 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006892 post-Golgi vesicle-mediated transport Biological Process

GO:0015031 protein transport Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0008526 phosphatidylinositol transfer activity Molecular Function

KEGG gene cross-reference

ath:AT1G55690

ath:AT3G24840

ath:AT4G39170

ath:AT5G56160

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.251

Rank 1 · TkA04G263020 · TK1151

Cytoplasm0.206

Rank 2 · TkA04G263020 · TK1151

Plastid0.183

Rank 3 · TkA04G263020 · TK1151

Golgi apparatus0.160

Rank 4 · TkA04G263020 · TK1151

Endoplasmic reticulum0.142

Rank 5 · TkA04G263020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29075NOCA1_mid74-86 aa

PF28528UBA_Pinta75-123 aa

PF00650CRAL_TRIO77-128 aa

PF03765CRAL_TRIO_N80-121 aa

PF08998Epsilon_antitox99-150 aa

PF00650CRAL_TRIO149-312 aa

PF13716CRAL_TRIO_2231-313 aa

PF29075NOCA1_mid457-533 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G263020	`PF29075`	NOCA1_mid	74	86	0.18	12.4
TkA04G263020	`PF28528`	UBA_Pinta	75	123	7.4e-05	23.6
TkA04G263020	`PF00650`	CRAL_TRIO	77	128	3.3e-29	102.4
TkA04G263020	`PF03765`	CRAL_TRIO_N	80	121	3.7e-05	24.5
TkA04G263020	`PF08998`	Epsilon_antitox	99	150	0.059	14.5
TkA04G263020	`PF00650`	CRAL_TRIO	149	312	3.3e-29	102.4
TkA04G263020	`PF13716`	CRAL_TRIO_2	231	313	5.7e-05	24.2
TkA04G263020	`PF29075`	NOCA1_mid	457	533	0.18	12.4
TkA04G263020	`PF28528`	UBA_Pinta	498	513	7.4e-05	23.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q501H5`	Arabidopsis thaliana	sp\|Q501H5\|SFH13_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH13	57.500%	Swiss-Prot	High
`F4K6D3`	Arabidopsis thaliana	sp\|F4K6D3\|SFH14_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH14	50.300%	Swiss-Prot	High
`F4J7S8`	Arabidopsis thaliana	sp\|F4J7S8\|SFH9_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH9	47.200%	Swiss-Prot	Medium
`F4JVA6`	Arabidopsis thaliana	sp\|F4JVA6\|SFH6_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH6	43.400%	Swiss-Prot	Medium
`F4IHJ0`	Arabidopsis thaliana	sp\|F4IHJ0\|SFH8_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH8	59.800%	Swiss-Prot	Medium

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