Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1365 bp · TkA04G261770|TK1151|cDNA
ATGAATAATACGAATTCAATCTACTTAACATGCGGATGCTTACTTTGGTTTCAGGATTTTTCCGATGACATCGATGTGAAAGTTAAAAAATACCAGAGAGGTGAAAGTGCCGACCTAGAGGCCTTGAAAGACAAAAAATTGAAAGGCCAGCTTGCTAATAGAGAAGAATTATATAAAAGGTCTGCTAATGCTGCTGCTAAAGCTGAAAAGTGGCTTATGCAAACTGAGAGTGGCCTTTTGGAAGCTGAAGGTATTGAAAA...
1365 bp · TkA04G261770|TK1151|CDS
ATGAATAATACGAATTCAATCTACTTAACATGCGGATGCTTACTTTGGTTTCAGGATTTTTCCGATGACATCGATGTGAAAGTTAAAAAATACCAGAGAGGTGAAAGTGCCGACCTAGAGGCCTTGAAAGACAAAAAATTGAAAGGCCAGCTTGCTAATAGAGAAGAATTATATAAAAGGTCTGCTAATGCTGCTGCTAAAGCTGAAAAGTGGCTTATGCAAACTGAGAGTGGCCTTTTGGAAGCTGAAGGTATTGAAAA...
Protein
Download Protein FASTA454 aa · TkA04G261770|TK1151|PROTEIN
MNNTNSIYLTCGCLLWFQDFSDDIDVKVKKYQRGESADLEALKDKKLKGQLANREELYKRSANAAAKAEKWLMQTESGLLEAEGIEKTWRFSQQAIAQEVDIASRKNQFDIVLPDLGPYTIDYTASGRYMLTAGRKGHLAIMDLHTLKPVKDFQVRETVRDAVFLHNELFFAAAQKKYTYIYSREGTELHCLKEHGAVMKLQFLKNHFLLSSINKSGHLHYQDITTGQIVGSYRTALGRSDVLQLNPYNSVIASGHSGGT...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G261770 |
|---|---|
| TK1151 ID | TkA04G261770 |
| OH-1004 ID | LXL04_002419 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 84.200 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G261770 |
|---|---|
| Location | Chr04:66182876-66185148 (+) |
| Description | Similar to utp7: Probable U3 small nucleolar RNA-associated protein 7 (Schizosaccharomyces pombe (strain 972 / ATCC 24843) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0000472 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0030490 maturation of SSU-rRNA Biological Process GO:0042274 ribosomal small subunit biogenesis Biological Process GO:0005654 nucleoplasm Cellular Component GO:0005730 nucleolus Cellular Component GO:0005732 sno(s)RNA-containing ribonucleoprotein complex Cellular Component GO:0030686 90S preribosome Cellular Component GO:0030688 preribosome, small subunit precursor Cellular Component GO:0032040 small-subunit processome Cellular Component |
| KEGG gene cross-reference | hsa:9277 mmu:57315 sce:YER082C spo:2543484 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF24817WD40_WDHD1_1st61-102 aaPF24805EIF3I96-179 aaPF24817WD40_WDHD1_1st118-269 aaPF25174Beta-prop_THOC3119-177 aaPF23414Beta-prop_EML_2119-231 aaPF25391WD40_Gbeta119-317 aaPF17005WD40_like119-226 aaPF24807WD40_CDC20-Fz120-161 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G261770 | PF24817 | WD40_WDHD1_1st | 61 | 102 | 2.4e-15 | 57.2 |
| TkA04G261770 | PF24805 | EIF3I | 96 | 179 | 5.3e-07 | 29.8 |
| TkA04G261770 | PF24817 | WD40_WDHD1_1st | 118 | 269 | 2.4e-15 | 57.2 |
| TkA04G261770 | PF25174 | Beta-prop_THOC3 | 119 | 177 | 5.8e-22 | 78.7 |
| TkA04G261770 | PF23414 | Beta-prop_EML_2 | 119 | 231 | 4.7e-17 | 63.0 |
| TkA04G261770 | PF25391 | WD40_Gbeta | 119 | 317 | 2.2e-08 | 34.2 |
| TkA04G261770 | PF17005 | WD40_like | 119 | 226 | 0.33 | 11.0 |
| TkA04G261770 | PF24807 | WD40_CDC20-Fz | 120 | 161 | 1.3e-16 | 61.5 |
| TkA04G261770 | PF23381 | Beta-prop_IFT122_1st | 120 | 224 | 1.4e-16 | 61.3 |
| TkA04G261770 | PF00400 | WD40 | 120 | 139 | 2.8e-15 | 56.8 |
| TkA04G261770 | PF23098 | Beta-prop_NOL10_N | 120 | 315 | 2.7e-05 | 24.2 |
| TkA04G261770 | PF24782 | WD40_MABP1-WDR62_2nd | 120 | 155 | 9.6e-05 | 22.2 |
| TkA04G261770 | PF23609 | Beta-prop_EIPR1 | 120 | 145 | 0.0062 | 16.7 |
| TkA04G261770 | PF25175 | Beta-prop_WDR5 | 121 | 158 | 7.2e-17 | 62.3 |
| TkA04G261770 | PF12894 | ANAPC4_WD40 | 121 | 158 | 2.4e-09 | 38.0 |
| TkA04G261770 | PF24796 | WDR55 | 121 | 154 | 1.6e-08 | 34.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.