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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G260590
Reference: TK1151 Chr: Chr04 Coordinates: 65869102-65873160 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1662 bp · TkA04G260590|TK1151|cDNA

GCTGTCCCTGCTTTTCTCTTCCTACCTACGTTTTGTGACTTCTGTCCATTTTTCCTTTCTCCCAAATTCAAATCATATTTTGCCTCACACTTCCTTCTAAATCAGTAAATCACCATGGACATGGCGTTTTCTTCAAAACCCCACTACTTCAGTTCCCAACTACAACACTACCACCAATCCATCGTTTCACCTCTTTCTTCCTTTCAACCCAAATCCCTTAATTTCACCCGCTCAACTTCTCTCTTTGCCGCCAAAAAAAC...

CDS

Download CDS FASTA

1278 bp · TkA04G260590|TK1151|CDS

ATGGACATGGCGTTTTCTTCAAAACCCCACTACTTCAGTTCCCAACTACAACACTACCACCAATCCATCGTTTCACCTCTTTCTTCCTTTCAACCCAAATCCCTTAATTTCACCCGCTCAACTTCTCTCTTTGCCGCCAAAAAAACGAGGGTGATTTCCCACCTCGATTCTCGAGTTAATGGCGCTCTTTCATCCGACCCCGATTCAAGCTTTCTCGACAGGCAAAAAGCATTAGAAGCTGCCATGAATGATATTAACAA...

Protein

Download Protein FASTA

425 aa · TkA04G260590|TK1151|PROTEIN

MDMAFSSKPHYFSSQLQHYHQSIVSPLSSFQPKSLNFTRSTSLFAAKKTRVISHLDSRVNGALSSDPDSSFLDRQKALEAAMNDINNSFGKGSVTRLGSLGGALVETFPSGCLPLDLALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAVDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G260590
TK1151 IDTkA04G260590
OH-1004 IDLXL04_037213
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G260590
LocationChr04:65869102-65873160 (-)
DescriptionSimilar to RECA: DNA repair protein recA homolog 1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g79050 Involved in recombination ability and DNA strand transfer activity. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037213 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006281 DNA repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0006974 DNA damage response Biological Process
GO:0009432 SOS response Biological Process
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0003684 damaged DNA binding Molecular Function
GO:0003697 single-stranded DNA binding Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0140664 ATP-dependent DNA damage sensor activity Molecular Function
KEGG gene cross-reference
ath:AT1G79050
cyc:PCC7424_4116
pma:Pro_1716
tel:tlr2089
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.688
Rank 1 · TkA04G260590 · TK1151
Mitochondrion0.288
Rank 2 · TkA04G260590 · TK1151
Nucleus0.053
Rank 3 · TkA04G260590 · TK1151
Cytoplasm0.032
Rank 4 · TkA04G260590 · TK1151
Peroxisome0.010
Rank 5 · TkA04G260590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13191AAA_1648-71 aa
PF00154RecA_N76-337 aa
PF23442DUF7125109-149 aa
PF06745ATPase110-180 aa
PF08423Rad51110-293 aa
PF13481AAA_25115-217 aa
PF27531MT3502_N119-220 aa
PF00005ABC_tran123-160 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G260590PF13191AAA_1648710.0614.6
TkA04G260590PF00154RecA_N763371.8e-114382.4
TkA04G260590PF23442DUF71251091490.06413.4
TkA04G260590PF06745ATPase1101801.8e-0628.2
TkA04G260590PF08423Rad511102932e-0628.0
TkA04G260590PF13481AAA_251152178.6e-0522.9
TkA04G260590PF27531MT3502_N1192200.00318.5
TkA04G260590PF00005ABC_tran1231600.2112.9
TkA04G260590PF13191AAA_161261740.0614.6
TkA04G260590PF01637ATPase_21271640.0008619.9
TkA04G260590PF13479AAA_241281720.02115.2
TkA04G260590PF00004AAA1312550.09713.8
TkA04G260590PF00936BMC1912270.2312.1
TkA04G260590PF06745ATPase2352621.8e-0628.2
TkA04G260590PF21096RecA_C3413963.6e-2175.7
TkA04G260590PF00004AAA3863980.09713.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q39199Arabidopsis thalianasp|Q39199|RECAC_ARATH DNA repair protein recA homolog 1, chloroplastic80.800%Swiss-ProtHigh

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