RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G253200
Reference: TK1151 Chr: Chr04 Coordinates: 64050789-64053077 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1695 bp · TkA04G253200|TK1151|cDNA

ATGTTTAGTCTCAATGGTCTACCACTGACTCCCACTTTACCTTCTTTTTCTAATGGAAGTCCACAAGTTATTAGACGGGGACGTCCTCGTATAGTAGAACAACCTTCTAACAATACCGATGATACGATAAATGGGCGTCCGCGTCGTCGACGTCGTTGCTCCAGTCCACCTACTAATACGAATGTTTCTAATGAATGTCCACGAGTTATTAGACGTGGACGTCCTCCTTTACCAGCACAACCTTCTGATATTGCTCCGCG...

CDS

Download CDS FASTA

1695 bp · TkA04G253200|TK1151|CDS

ATGTTTAGTCTCAATGGTCTACCACTGACTCCCACTTTACCTTCTTTTTCTAATGGAAGTCCACAAGTTATTAGACGGGGACGTCCTCGTATAGTAGAACAACCTTCTAACAATACCGATGATACGATAAATGGGCGTCCGCGTCGTCGACGTCGTTGCTCCAGTCCACCTACTAATACGAATGTTTCTAATGAATGTCCACGAGTTATTAGACGTGGACGTCCTCCTTTACCAGCACAACCTTCTGATATTGCTCCGCG...

Protein

Download Protein FASTA

564 aa · TkA04G253200|TK1151|PROTEIN

MFSLNGLPLTPTLPSFSNGSPQVIRRGRPRIVEQPSNNTDDTINGRPRRRRRCSSPPTNTNVSNECPRVIRRGRPPLPAQPSDIAPRSRRRTPLTPSLCNHRDDISVSRVIRRGRPTLREDVPRDSTHSPIDAAQFTSIPIPVTSSLGRCIPTINEDTCGSMRPIPHLIYSSRTIVGVDGNTLNSSMMCNPVLRPTTNRSNVPPVVTRPTPQNDVHLHRAARQNTPETHNTHLRRMFEYWDCGDATRICQYCTAMVWYEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G253200
TK1151 IDTkA04G253200
OH-1004 IDLXL04_008398
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)89.600
Protein coverage (%)TK1151 99.468 / OH-1004 16.213
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G253200
LocationChr04:64050789-64053077 (-)
DescriptionSimilar to pif1: ATP-dependent DNA helicase PIF1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008398 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000723 telomere maintenance Biological Process
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0001117 protein-DNA-RNA complex disassembly Biological Process
GO:0006260 DNA replication Biological Process
GO:0006281 DNA repair Biological Process
GO:0006289 nucleotide-excision repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0007004 telomere maintenance via telomerase Biological Process
GO:0010224 response to UV-B Biological Process
GO:0032211 negative regulation of telomere maintenance via telomerase Biological Process
GO:0051321 meiotic cell cycle Biological Process
GO:0000781 chromosome, telomeric region Cellular Component
KEGG gene cross-reference
ath:AT5G08020
cje:Cj0945c
mmu:208084
rno:367645
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.963
Rank 1 · TkA04G253200 · TK1151
Cytoplasm0.168
Rank 2 · TkA04G253200 · TK1151
Mitochondrion0.017
Rank 3 · TkA04G253200 · TK1151
Cell membrane0.011
Rank 4 · TkA04G253200 · TK1151
Endoplasmic reticulum0.006
Rank 5 · TkA04G253200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser