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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G239240
Reference: TK1151 Chr: Chr04 Coordinates: 60699331-60710136 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1104 bp · TkA04G239240|TK1151|cDNA

AGTCTGCAAACGACTGTTGATTGGCTTTCACATAAACCAAACATCAATGTACTGAAATATGATGTATATGCTATCAATGGATACACATTCCGTACAAAAAGTCGAGAATGTAAAGGTTACCAAGACAGTGGTGTTAGTGTTGTTGCAACAGACACACACATTTCCAAAGATGTTGTAACCCATGTTAAAAACACTTATAGAAATGGGGTCAAAAAGGATAAACTAGGGTACACACTTGTGGAACTAAAAAGGGACATGGA...

CDS

Download CDS FASTA

1104 bp · TkA04G239240|TK1151|CDS

AGTCTGCAAACGACTGTTGATTGGCTTTCACATAAACCAAACATCAATGTACTGAAATATGATGTATATGCTATCAATGGATACACATTCCGTACAAAAAGTCGAGAATGTAAAGGTTACCAAGACAGTGGTGTTAGTGTTGTTGCAACAGACACACACATTTCCAAAGATGTTGTAACCCATGTTAAAAACACTTATAGAAATGGGGTCAAAAAGGATAAACTAGGGTACACACTTGTGGAACTAAAAAGGGACATGGA...

Protein

Download Protein FASTA

367 aa · TkA04G239240|TK1151|PROTEIN

SLQTTVDWLSHKPNINVLKYDVYAINGYTFRTKSRECKGYQDSGVSVVATDTHISKDVVTHVKNTYRNGVKKDKLGYTLVELKRDMDFKVGQPIEIIADGSGFSASYYTGTVVQVYEDYNERVAVRYDKVKDYNGNPLVDDLPKEDLRPVAPKVDVNLETNDIVNAWDGEGWRNGKLIHPAGNLYTVDLGSESDPKIEVFRKKHLCINQRWQTLEHGQHRWVYVKNQNVDFLVGSRVEIVGFEAGMTNSYYAGTVVGYSR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G239240
TK1151 IDTkA04G239240
OH-1004 IDLXL04_039589
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)61.100
Protein coverage (%)TK1151 90.463 / OH-1004 43.413
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G239240
LocationChr04:60699331-60710136 (-)
DescriptionSimilar to AGDP1: Protein AGENET DOMAIN (AGD)-CONTAINING P1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039589 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006346 DNA methylation-dependent constitutive heterochromatin formation Biological Process
GO:0000775 chromosome, centromeric region Cellular Component
GO:0000792 heterochromatin Cellular Component
GO:0005634 nucleus Cellular Component
GO:0042393 histone binding Molecular Function
GO:0140566 histone reader activity Molecular Function
KEGG gene cross-reference
ath:AT1G09320
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.533
Rank 1 · TkA04G239240 · TK1151
Nucleus0.401
Rank 2 · TkA04G239240 · TK1151
Extracellular0.108
Rank 3 · TkA04G239240 · TK1151
Cell membrane0.062
Rank 4 · TkA04G239240 · TK1151
Endoplasmic reticulum0.058
Rank 5 · TkA04G239240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00018SH3_183-99 aa
PF05641Agenet91-152 aa
PF18115Tudor_3102-128 aa
PF23327Chromo_MORC2_6th106-130 aa
PF05641Agenet170-204 aa
PF00018SH3_1216-227 aa
PF05641Agenet234-291 aa
PF23327Chromo_MORC2_6th243-271 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G239240PF00018SH3_183990.1412.5
TkA04G239240PF05641Agenet911522.5e-1867.0
TkA04G239240PF18115Tudor_31021280.00517.4
TkA04G239240PF23327Chromo_MORC2_6th1061301.4e-0525.4
TkA04G239240PF05641Agenet1702042.5e-1867.0
TkA04G239240PF00018SH3_12162270.1412.5
TkA04G239240PF05641Agenet2342912.5e-1867.0
TkA04G239240PF23327Chromo_MORC2_6th2432711.4e-0525.4
TkA04G239240PF18115Tudor_32452690.00517.4
TkA04G239240PF00018SH3_12973190.1412.5
TkA04G239240PF23327Chromo_MORC2_6th3003251.4e-0525.4
TkA04G239240PF05641Agenet3013292.5e-1867.0
TkA04G239240PF23327Chromo_MORC2_6th3443531.4e-0525.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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