TkA04G237380 | RubberDandelionOmics

Gene overview

TkA04G237380

Reference: TK1151 Chr: Chr04 Coordinates: 60276277-60276716 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

333 bp · TkA04G237380|TK1151|cDNA

ATGCGTGGACATCTCACGGAAAAAGCTGACGTGTTTGGGTTTGGAGTTGTGGCCTTTGAGATTATTAGTGGTAGGCCCAATTCCGATTCAAGTTTCGAAGAGGATAAAATATATCTTCTCGAATGGGCATGGAACCTACACGAAGCTAACCGTGAAATCGAGTTGGTGGATGAAGAACTATCTGAATTTGATGAAAACGAAGTGAAAAGAGTAACAAGAGTTGCTTTTTTATGCACGCAAACATCTCCAATAGAACGACC...

CDS

Download CDS FASTA

333 bp · TkA04G237380|TK1151|CDS

ATGCGTGGACATCTCACGGAAAAAGCTGACGTGTTTGGGTTTGGAGTTGTGGCCTTTGAGATTATTAGTGGTAGGCCCAATTCCGATTCAAGTTTCGAAGAGGATAAAATATATCTTCTCGAATGGGCATGGAACCTACACGAAGCTAACCGTGAAATCGAGTTGGTGGATGAAGAACTATCTGAATTTGATGAAAACGAAGTGAAAAGAGTAACAAGAGTTGCTTTTTTATGCACGCAAACATCTCCAATAGAACGACC...

Protein

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110 aa · TkA04G237380|TK1151|PROTEIN

MRGHLTEKADVFGFGVVAFEIISGRPNSDSSFEEDKIYLLEWAWNLHEANREIELVDEELSEFDENEVKRVTRVAFLCTQTSPIERPSMSPVVAMISGDIEASGDITRPG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G237380`
TK1151 ID	TkA04G237380
OH-1004 ID	LXL04_039500
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	95.500
Protein coverage (%)	TK1151 100.000 / OH-1004 49.774 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G237380

Location Chr04:60276277-60276716 (+)

Description Similar to At1g56140: Probable LRR receptor-like serine/threonine-protein kinase At1g56140

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g56140`	Probable LRR receptor-like serine/threonine-protein kinase At1g56140.	No verified direct reference in this release
`At1g56130`	Probable LRR receptor-like serine/threonine-protein kinase At1g56130.	No verified direct reference in this release
`At1g53420`	Probable LRR receptor-like serine/threonine-protein kinase At1g53420.	No verified direct reference in this release
`At1g16670`	Negative regulator of freezing tolerance that phosphorylates 14-3-3 proteins (e.g. GRF6) thus triggering their translocation from the cytosol to the nucleus in response to cold stress.	No verified direct reference in this release
`At1g34210`	Serine/threonine-kinase involved in brassinosteroid-dependent and -independent signaling pathways.	Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE proteins serve brassinosteroid-dependent and -independent signaling pathways.2008 · DOI: 10.1104/pp.108.123216

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039500 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0031667 response to nutrient levels Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:0052542 defense response by callose deposition Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0033612 receptor serine/threonine kinase binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G07650

ath:AT1G53430

ath:AT1G53440

ath:AT1G56130

ath:AT1G56140

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.444

Rank 1 · TkA04G237380 · TK1151

Cytoplasm0.401

Rank 2 · TkA04G237380 · TK1151

Nucleus0.196

Rank 3 · TkA04G237380 · TK1151

Endoplasmic reticulum0.066

Rank 4 · TkA04G237380 · TK1151

Golgi apparatus0.064

Rank 5 · TkA04G237380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr3-94 aa

PF00069Pkinase4-92 aa

PF23764Beta-barrel_GLAA-B_II48-74 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G237380	`PF07714`	PK_Tyr_Ser-Thr	3	94	4.8e-05	23.5
TkA04G237380	`PF00069`	Pkinase	4	92	0.055	13.6
TkA04G237380	`PF23764`	Beta-barrel_GLAA-B_II	48	74	0.037	15.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`C0LGH3`	Arabidopsis thaliana	sp\|C0LGH3\|Y5614_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g56140	62.700%	Swiss-Prot	High
`C0LGH2`	Arabidopsis thaliana	sp\|C0LGH2\|Y1561_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g56130	64.000%	Swiss-Prot	High
`C0LGG7`	Arabidopsis thaliana	sp\|C0LGG7\|Y1534_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g53420	47.500%	Swiss-Prot	Medium
`Q93YN1`	Arabidopsis thaliana	sp\|Q93YN1\|CRPK1_ARATH Cold-responsive protein kinase 1	45.500%	Swiss-Prot	Medium
`Q9XIC7`	Arabidopsis thaliana	sp\|Q9XIC7\|SERK2_ARATH Somatic embryogenesis receptor kinase 2	43.000%	Swiss-Prot	Medium

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