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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G233780
Reference: TK1151 Chr: Chr04 Coordinates: 59359844-59360476 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

591 bp · TkA04G233780|TK1151|cDNA

ATGATTAGTTTGAAGGATCTCTACAATGGACAATGCTTTGCACCGCTCATAATCAGATCCAAAAATCTTAGAACCTTAAGACTTTTCAGATGTTTCGGAGATTGGGATGACGTTCTGAAACTTGTTAGCAATAACATCAAGGGATTGAACTGGGCACATCTGAATTGTCAAAATCTTGAAATCCTTCACCTTCTGAAAACTCCCGATTGTACTAATTCGGGGCTAACGTCCATGGCGGAGAACTGTAAGCTTCTAAGGAA...

CDS

Download CDS FASTA

591 bp · TkA04G233780|TK1151|CDS

ATGATTAGTTTGAAGGATCTCTACAATGGACAATGCTTTGCACCGCTCATAATCAGATCCAAAAATCTTAGAACCTTAAGACTTTTCAGATGTTTCGGAGATTGGGATGACGTTCTGAAACTTGTTAGCAATAACATCAAGGGATTGAACTGGGCACATCTGAATTGTCAAAATCTTGAAATCCTTCACCTTCTGAAAACTCCCGATTGTACTAATTCGGGGCTAACGTCCATGGCGGAGAACTGTAAGCTTCTAAGGAA...

Protein

Download Protein FASTA

196 aa · TkA04G233780|TK1151|PROTEIN

MISLKDLYNGQCFAPLIIRSKNLRTLRLFRCFGDWDDVLKLVSNNIKGLNWAHLNCQNLEILHLLKTPDCTNSGLTSMAENCKLLRKLHIDGWKTNRIDDEGLIDVAKNCPNLQELVLIGVNPIRASLERFASNCQKLERLALCGSETFGDAEISCIAGKFTALRKLCIKSCPVSDHGMEALALGCPNLVIVKVKK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G233780
TK1151 IDTkA04G233780
OH-1004 IDLXL04_039335
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)93.300
Protein coverage (%)TK1151 100.000 / OH-1004 91.703
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G233780
LocationChr04:59359844-59360476 (-)
DescriptionSimilar to FBL8: Putative F-box/LRR-repeat protein 8
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g07400 Putative F-box/LRR-repeat protein 8. No verified direct reference in this release
At5g67250 Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. No verified direct reference in this release
At1g47056 F-box protein At1g47056. No verified direct reference in this release
At3g50080 F-box/LRR-repeat protein 16. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039335 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006289 nucleotide-excision repair Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0010225 response to UV-C Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0019005 SCF ubiquitin ligase complex Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
KEGG gene cross-reference
ath:AT1G47056
ath:AT3G50080
ath:AT4G07400
ath:AT4G15475
ath:AT5G67250
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.608
Rank 1 · TkA04G233780 · TK1151
Cytoplasm0.243
Rank 2 · TkA04G233780 · TK1151
Cell membrane0.083
Rank 3 · TkA04G233780 · TK1151
Plastid0.044
Rank 4 · TkA04G233780 · TK1151
Endoplasmic reticulum0.042
Rank 5 · TkA04G233780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24758LRR_At5g5637014-44 aa
PF13516LRR_620-31 aa
PF12799LRR_421-28 aa
PF13855LRR_822-28 aa
PF12799LRR_438-64 aa
PF13855LRR_838-64 aa
PF13516LRR_639-47 aa
PF25372LRR_FBXL1554-192 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G233780PF24758LRR_At5g5637014442.7e-1041.0
TkA04G233780PF13516LRR_620310.2112.5
TkA04G233780PF12799LRR_421281.9e-0628.6
TkA04G233780PF13855LRR_822281.49.4
TkA04G233780PF12799LRR_438641.9e-0628.6
TkA04G233780PF13855LRR_838641.49.4
TkA04G233780PF13516LRR_639470.2112.5
TkA04G233780PF25372LRR_FBXL15541923.2e-0936.4
TkA04G233780PF24758LRR_At5g56370551472.7e-1041.0
TkA04G233780PF13516LRR_655640.2112.5
TkA04G233780PF29594LRR_SKP258900.0001122.3
TkA04G233780PF08562Crisp66753.78.9
TkA04G233780PF08562Crisp70863.78.9
TkA04G233780PF12799LRR_4731001.9e-0628.6
TkA04G233780PF12799LRR_4851251.9e-0628.6
TkA04G233780PF13516LRR_6961050.2112.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9S9X4Arabidopsis thalianasp|Q9S9X4|FBL8_ARATH Putative F-box/LRR-repeat protein 859.000%Swiss-ProtHigh
Q9FE83Arabidopsis thalianasp|Q9FE83|SKIP2_ARATH F-box protein SKIP258.400%Swiss-ProtHigh
Q9C626Arabidopsis thalianasp|Q9C626|FB37_ARATH F-box protein At1g4705657.100%Swiss-ProtHigh
Q9SN10Arabidopsis thalianasp|Q9SN10|FBL16_ARATH F-box/LRR-repeat protein 1652.600%Swiss-ProtHigh

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