TkA04G209850 | RubberDandelionOmics

Gene overview

TkA04G209850

Reference: TK1151 Chr: Chr04 Coordinates: 53742606-53750006 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1337 bp · TkA04G209850|TK1151|cDNA

ATGCCACCGATTGAATGTATCGGCGTTACTTCACCACATTCCATGATTTCCGCCGAGGATTTGTTCTTTCATCCACCGTTATATGCTATGAAATCAAGAGTTGGTAGGATTGAAGATGAACACCAAATGCTTGATGAAATGCTTGAAAGAACTGTGTTTGATAAAATGCCGATGACAAAATCAACCATAACAGGTTGTGGGGATAGGGGTAAAGCTGGAAATAAAAGATTCAAGAGCATGAGGGCTAAGGGAATTGAGCC...

CDS

Download CDS FASTA

1140 bp · TkA04G209850|TK1151|CDS

ATGCCACCGATTGAATGTATCGGCGTTACTTCACCACATTCCATGATTTCCGCCGAGGATTTGTTCTTTCATCCACCGTTATATGCTATGAAATCAAGAGTTGGTAGGATTGAAGATGAACACCAAATGCTTGATGAAATGCTTGAAAGAACTGTGTTTGATAAAATGCCGATGACAAAATCAACCATAACAGGTTGTGGGGATAGGGGTAAAGCTGGAAATAAAAGATTCAAGAGCATGAGGGCTAAGGGAATTGAGCC...

Protein

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379 aa · TkA04G209850|TK1151|PROTEIN

MPPIECIGVTSPHSMISAEDLFFHPPLYAMKSRVGRIEDEHQMLDEMLERTVFDKMPMTKSTITGCGDRGKAGNKRFKSMRAKGIEPKCQTHVYFLSKVLHMGGCFTSQQPALSHNINGFRNAITLPKYCPIALHLSFFVLIQDFICILFRFQRAIGKSMEEGTWGIQNTWGAVWSFDQVCCPQAAVVCPQRAEKGAPDQVQKTWVVIMGELCKVLRSARVHTFLSGLDESYNQVKSHILLMEPLPNVKTAYSMFSREES...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G209850`
TK1151 ID	TkA04G209850
OH-1004 ID	LXL04_016743
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	67.100
Protein coverage (%)	TK1151 17.942 / OH-1004 3.696 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G209850

Location Chr04:53742606-53750006 (-)

Description Similar to RE1: Retrovirus-related Pol polyprotein from transposon RE1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g79440`	Oxidizes specifically succinate semialdehyde.	Plant succinic semialdehyde dehydrogenase. Cloning, purification, localization in mitochondria, and regulation by adenine nucleotides.1999 · DOI: 10.1104/pp.121.2.589 Succinic semialdehyde dehydrogenase is involved in the robust patterning of Arabidopsis leaves along the adaxial-abaxial axis.2011 · DOI: 10.1093/pcp/pcr079

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0173900`	Oxidizes specifically succinate semialdehyde.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_016743 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006310 DNA recombination Biological Process

GO:0006508 proteolysis Biological Process

GO:0015074 DNA integration Biological Process

GO:0003676 nucleic acid binding Molecular Function

GO:0003964 RNA-directed DNA polymerase activity Molecular Function

GO:0004190 aspartic-type endopeptidase activity Molecular Function

GO:0004519 endonuclease activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.389

Rank 1 · TkA04G209850 · TK1151

Nucleus0.338

Rank 2 · TkA04G209850 · TK1151

Mitochondrion0.175

Rank 3 · TkA04G209850 · TK1151

Endoplasmic reticulum0.084

Rank 4 · TkA04G209850 · TK1151

Cell membrane0.075

Rank 5 · TkA04G209850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24984HEAT_EF3_GNC1179-252 aa

PF00171Aldedh344-373 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G209850	`PF24984`	HEAT_EF3_GNC1	179	252	0.29	12.1
TkA04G209850	`PF00171`	Aldedh	344	373	2.8e-06	26.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SAK4`	Arabidopsis thaliana	sp\|Q9SAK4\|SSDH_ARATH Succinate-semialdehyde dehydrogenase, mitochondrial	83.300%	Swiss-Prot	Low
`B9F3B6`	Oryza sativa subsp. japonica	sp\|B9F3B6\|SSDH_ORYSJ Succinate-semialdehyde dehydrogenase, mitochondrial	86.100%	Swiss-Prot	Low

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