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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G178100
Reference: TK1151 Chr: Chr04 Coordinates: 46072940-46076701 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2203 bp · TkA04G178100|TK1151|cDNA

GAAAGTTTAGGGTCTAAAGAGAAGTACTTTTCCTCAGAAAAGGGTTTTGGGGGGTTTTTCTGGTTCGCATTGCGTCTCCATCTCCGTTACTCCGTCGCCTCTCTCCTTGGCCTCCATTTCGTTCTCAAGATCTTGCACCATGGTTCTATCAAATAAGAAGCTAAAGGAAAAGCTACGAGTCCAACTCGCCGAAACCTTAGCCAAATCAGAGTCACAAGTAAACCAACCCAATCCCAACGACTCGCAAACCCCCCAGTCAT...

CDS

Download CDS FASTA

1809 bp · TkA04G178100|TK1151|CDS

ATGGTTCTATCAAATAAGAAGCTAAAGGAAAAGCTACGAGTCCAACTCGCCGAAACCTTAGCCAAATCAGAGTCACAAGTAAACCAACCCAATCCCAACGACTCGCAAACCCCCCAGTCATTCAAATCTCTCTTGAATTTGGTAACCCAAAAACCTAAATTATCCAAAAGAGAAAAACGCAGAGTTAAATTACCATCTGTTCAAGGAAGTTCAGAACTTCAAACTCATGAAAATGGTGAAAGCGAAGATGGTAATGGTGG...

Protein

Download Protein FASTA

602 aa · TkA04G178100|TK1151|PROTEIN

MVLSNKKLKEKLRVQLAETLAKSESQVNQPNPNDSQTPQSFKSLLNLVTQKPKLSKREKRRVKLPSVQGSSELQTHENGESEDGNGGLKKNNKRKREKDAVEVKDPNEIKSNKKKNKKKKNKKAAKKEEEEGLQKAIAITEEQPVQQTSKPIETHNSKEDPSISTKVYVGGIPYYSTVDDIRSYFEGCGSITEIDCLKFPETGKFNGIAMISFRTEAASKRALALDGSDMGGLSLKVQPYKATREKKVSDFAPAMLDGYN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G178100
TK1151 IDTkA04G178100
OH-1004 IDLXL04_035022
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G178100
LocationChr04:46072940-46076701 (+)
DescriptionSimilar to HEXBP: DNA-binding protein HEXBP
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g55340 RNA-binding protein which mediates polarized mRNA (e.g.
A novel RNA-binding protein associated with cell plate formation.2008 · DOI: 10.1104/pp.108.120527

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035022 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000914 phragmoplast assembly Biological Process
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0009920 cell plate formation involved in plant-type cell wall biogenesis Biological Process
GO:0045087 innate immune response Biological Process
GO:1901259 chloroplast rRNA processing Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009524 phragmoplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
GO:0003677 DNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G55340
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.765
Rank 1 · TkA04G178100 · TK1151
Cytoplasm0.227
Rank 2 · TkA04G178100 · TK1151
Cell membrane0.056
Rank 3 · TkA04G178100 · TK1151
Endoplasmic reticulum0.053
Rank 4 · TkA04G178100 · TK1151
Plastid0.030
Rank 5 · TkA04G178100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23458DUF713095-119 aa
PF14353CpXC109-132 aa
PF00054Laminin_G_1136-188 aa
PF16367RRM_7164-192 aa
PF14605Nup35_RRM_2166-223 aa
PF00076RRM_1167-235 aa
PF28441RRM_11169-227 aa
PF30379SLU7_N188-197 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G178100PF23458DUF7130951190.5810.8
TkA04G178100PF14353CpXC1091320.08613.7
TkA04G178100PF00054Laminin_G_11361880.07214.0
TkA04G178100PF16367RRM_71641920.0006820.3
TkA04G178100PF14605Nup35_RRM_21662230.2212.2
TkA04G178100PF00076RRM_11672352.8e-2691.9
TkA04G178100PF28441RRM_111692270.01116.7
TkA04G178100PF30379SLU7_N1881971.69.0
TkA04G178100PF16367RRM_72612830.0006820.3
TkA04G178100PF00076RRM_12623292.8e-2691.9
TkA04G178100PF28441RRM_112672910.01116.7
TkA04G178100PF29534Salivary_glue3563830.003318.0
TkA04G178100PF25160LdpA_Fe-S-bd3593830.2312.0
TkA04G178100PF30379SLU7_N3593791.69.0
TkA04G178100PF14353CpXC3613790.08613.7
TkA04G178100PF12773DZR3633800.2812.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M3B8Arabidopsis thalianasp|Q9M3B8|PHIP1_ARATH Phragmoplastin interacting protein 141.000%Swiss-ProtMedium

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