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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G177750
Reference: TK1151 Chr: Chr04 Coordinates: 46005341-46011448 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4556 bp · TkA04G177750|TK1151|cDNA

TTCTTTTTAACCGCCATTCATACAGAGATATTCGCAGCGAAGCTGAGGATAGCGGGGGAGATTGGAAATGGAGAACAGCACCACAACTTCTCCTCCTACGACATCCAATCACGATAACAATGCAGAAGTCCTTGCGAATTCATCGAAAACCAGAGAAGAAGGCGAGCTTTCTGCTTCTGAAAATGGCGAGTTTACAGGTTCTCAGTTTCTTTATAGGACCACTCTTCCAGAGGCTCAATCAAACAAGGATGCATACTTGA...

CDS

Download CDS FASTA

4155 bp · TkA04G177750|TK1151|CDS

ATGGAGAACAGCACCACAACTTCTCCTCCTACGACATCCAATCACGATAACAATGCAGAAGTCCTTGCGAATTCATCGAAAACCAGAGAAGAAGGCGAGCTTTCTGCTTCTGAAAATGGCGAGTTTACAGGTTCTCAGTTTCTTTATAGGACCACTCTTCCAGAGGCTCAATCAAACAAGGATGCATACTTGATAGGGAAGTCTAGTCTGACTCGCAAAACTTTATATTCTACAATGCCTTCAAGAACTTCTGGACATTC...

Protein

Download Protein FASTA

1384 aa · TkA04G177750|TK1151|PROTEIN

MENSTTTSPPTTSNHDNNAEVLANSSKTREEGELSASENGEFTGSQFLYRTTLPEAQSNKDAYLIGKSSLTRKTLYSTMPSRTSGHSNNSKATEKNRVPFVISFSDDDSGSDSEEHIKENTIESDDMPRGVMENRKLPSSVENRNPQMVQKTTKTNTKIPKKLSGSRTFLSSMNRVNGTSSSKSNGNTFHVKKSSAPSKNKVGPNVHINSSKLQDLRQLIAIRENELKSKASSSIKNSGNANMNPKITAVRSRDSAENVE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G177750
TK1151 IDTkA04G177750
OH-1004 IDLXL04_035027
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)98.700
Protein coverage (%)TK1151 100.000 / OH-1004 95.983
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G177750
LocationChr04:46005341-46011448 (+)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035027 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.937
Rank 1 · TkA04G177750 · TK1151
Cytoplasm0.103
Rank 2 · TkA04G177750 · TK1151
Cell membrane0.036
Rank 3 · TkA04G177750 · TK1151
Endoplasmic reticulum0.020
Rank 4 · TkA04G177750 · TK1151
Plastid0.012
Rank 5 · TkA04G177750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13428TPR_14444-458 aa
PF11006DUF2845503-533 aa
PF10650zf-C3H1696-716 aa
PF25542zf-CCCH_12701-714 aa
PF23240HAT_PRP39_N835-903 aa
PF23233HAT_Syf1_CNRKL1_N836-871 aa
PF13428TPR_14841-865 aa
PF23233HAT_Syf1_CNRKL1_N880-904 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G177750PF13428TPR_144444589.8e-0523.4
TkA04G177750PF11006DUF28455035330.3411.9
TkA04G177750PF10650zf-C3H16967161.4e-0938.2
TkA04G177750PF25542zf-CCCH_127017140.2112.0
TkA04G177750PF23240HAT_PRP39_N8359039.2e-0626.5
TkA04G177750PF23233HAT_Syf1_CNRKL1_N8368713.5e-0730.8
TkA04G177750PF13428TPR_148418659.8e-0523.4
TkA04G177750PF23233HAT_Syf1_CNRKL1_N8809043.5e-0730.8
TkA04G177750PF13428TPR_149319519.8e-0523.4
TkA04G177750PF13428TPR_14105010739.8e-0523.4
TkA04G177750PF23240HAT_PRP39_N108111229.2e-0626.5
TkA04G177750PF23240HAT_PRP39_N108211239.2e-0626.5
TkA04G177750PF13428TPR_14110211309.8e-0523.4
TkA04G177750PF11006DUF2845111411250.3411.9
TkA04G177750PF13428TPR_14114411619.8e-0523.4
TkA04G177750PF23240HAT_PRP39_N133413639.2e-0626.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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