TkA04G175090 | RubberDandelionOmics

Gene overview

TkA04G175090

Reference: TK1151 Chr: Chr04 Coordinates: 45342831-45344948 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1725 bp · TkA04G175090|TK1151|cDNA

TTTGCTACGTATAATAAACTAATAAACATACCAAGCCAAAACCTTATTAACACATTGTTCTTTTCCTATTGCGATGCCTGCATCCTTTAATTTGTCGATTTGTTTCAATTCTCTCCATTGAAGATCATTTATTTTTGAAGCAGCTTATTGCATCTTCGGCTACAACTTCCAATCGAGGATATAATTCGACAAAGAAGAAGAGCAATGGATTGTAGACCATGTCCGCCAACCGGGAACCATGATTGATGGTGCTAGGCGAT...

CDS

Download CDS FASTA

1278 bp · TkA04G175090|TK1151|CDS

ATGAAGATGTCGAGCCATTACTTTTCGCCGTGCCTCGTTGTTCTCTTAACGTTTTTCCAAATCGTGGTGCCAGTGTACCCAATCGGTGTAAACTATGGCACAACTGCTGACAATCTACCTTCACCTACAGAAGTTGCACAATTCCTTAGAGAGAACACAATCATTGATCGTATCAAAATCTTCGATATGAATACTGAAATCATTAAAGCCTTTGCGAACACGGGCATCTATGTGACAGTTACCGTCCCCAATGGAGATAT...

Protein

Download Protein FASTA

425 aa · TkA04G175090|TK1151|PROTEIN

MKMSSHYFSPCLVVLLTFFQIVVPVYPIGVNYGTTADNLPSPTEVAQFLRENTIIDRIKIFDMNTEIIKAFANTGIYVTVTVPNGDIPSLKEQAKAEKWVRDNIKPYYPDTKIRYIAVGNEILHWGTPDIIDSLVPAMVTIHKALVKAGISDIKVTTPHSLGIMLSSDPPSSGAFRPGWDVGIIKPMLAFLKESNSAFMVNPYPYFGYSPGNDSFCLFRPNPGFVDEGTGKKYDNMFDSLMDAIYTAMKKLGYGDVPIVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G175090`
TK1151 ID	TkA04G175090
OH-1004 ID	LXL04_035048
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	96.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G175090

Location Chr04:45342831-45344948 (-)

Description Similar to GLC1: Glucan endo-1,3-beta-glucosidase

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g34480`	Glucan endo-1,3-beta-glucosidase 7.	No verified direct reference in this release
`At1g32860`	Glucan endo-1,3-beta-glucosidase 11.	No verified direct reference in this release
`At5g42100`	Plasmodesmal-associated membrane beta-1,3-glucanase involved in plasmodesmal callose degradation and functions in the gating of plasmodesmata.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035048 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0006076 (1->3)-beta-D-glucan catabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0007154 cell communication Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016020 membrane Cellular Component

GO:0098552 side of membrane Cellular Component

KEGG gene cross-reference

ath:AT1G32860

ath:AT4G34480

ath:AT5G42100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.691

Rank 1 · TkA04G175090 · TK1151

Extracellular0.114

Rank 2 · TkA04G175090 · TK1151

Cytoplasm0.087

Rank 3 · TkA04G175090 · TK1151

Endoplasmic reticulum0.083

Rank 4 · TkA04G175090 · TK1151

Lysosome / Vacuole0.054

Rank 5 · TkA04G175090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00332Glyco_hydro_1728-341 aa

PF29664BtgE-BtgC_glyc-hydro53-329 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G175090	`PF00332`	Glyco_hydro_17	28	341	1.9e-82	278.0
TkA04G175090	`PF29664`	BtgE-BtgC_glyc-hydro	53	329	4.9e-10	39.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M069`	Arabidopsis thaliana	sp\|Q9M069\|E137_ARATH Glucan endo-1,3-beta-glucosidase 7	45.800%	Swiss-Prot	Medium
`Q8L868`	Arabidopsis thaliana	sp\|Q8L868\|E1311_ARATH Glucan endo-1,3-beta-glucosidase 11	41.800%	Swiss-Prot	Medium
`Q9FHX5`	Arabidopsis thaliana	sp\|Q9FHX5\|E1310_ARATH Glucan endo-1,3-beta-glucosidase 10	42.000%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card