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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G170210
Reference: TK1151 Chr: Chr04 Coordinates: 43976618-43978021 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1148 bp · TkA04G170210|TK1151|cDNA

ATTTAAATTGCTTTGCGGCTGGGGACTAATTATTCAATTCTTTCATCAGAAATGATACCATTTAATCAAAGTGTTGAGATGACTTGTGGATAACCCCAAAACCACCATGGGATTCCATTGGAGAACAAACCCTCACCATTCACCTTCAAATATCTCTACATCAGTCATCCATGGACCTCTATCTCAAAATGGACAAATGTGTTTGGTCTTCTTGGACACAAGATGCTTTTCTTGATCAATTAAGCAACTGGGATCACTCC...

CDS

Download CDS FASTA

735 bp · TkA04G170210|TK1151|CDS

ATGGACCTCTATCTCAAAATGGACAAATGTGTTTGGTCTTCTTGGACACAAGATGCTTTTCTTGATCAATTAAGCAACTGGGATCACTCCCCCGCTGTTCATCATCAATACAGTGCTTCAGATCATGGTGGTGGTGAATGGGAAGATTCGAAGGGAGGAAGTGCTTCCAAGAACCACAGTGAAGCTGAAAAGAGGCGTAGAGATAGGATCAATGCACATCTTGTTACTTTAAGGAAACTCGTCTCCATTTCTGAAAAGAT...

Protein

Download Protein FASTA

244 aa · TkA04G170210|TK1151|PROTEIN

MDLYLKMDKCVWSSWTQDAFLDQLSNWDHSPAVHHQYSASDHGGGEWEDSKGGSASKNHSEAEKRRRDRINAHLVTLRKLVSISEKMDKATLLGKVVEHVKELKSETMELSKVFTIPTDLDEVIIDLDSSTADSSNNVFIKASVCCEDRPELFSEIKQALQSLRLTMVQADLACLSGRIKCNFIVCVTNGNATNENEMKTLVQSLQKLLGRIVSTSSWTVSSNYRIKSKRQRFFCSSSYGTNEH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G170210
TK1151 IDTkA04G170210
OH-1004 IDLXL04_035095
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G170210
LocationChr04:43976618-43978021 (+)
DescriptionSimilar to BHLH51: Transcription factor bHLH51
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g25710 Transcription factor required for MONOPTEROS-dependent root initiation in embryo.
MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor.2010 · DOI: 10.1038/nature08836
At1g68810 Transcription factor bHLH30. No verified direct reference in this release
At3g56770 Putative transcription factor bHLH107. No verified direct reference in this release
At2g41130 Transcription factor bHLH106. No verified direct reference in this release
At4g38070 Transcription factor bHLH131. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035095 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009718 anthocyanin-containing compound biosynthetic process Biological Process
GO:0016036 cellular response to phosphate starvation Biological Process
GO:0042538 hyperosmotic salinity response Biological Process
GO:0048364 root development Biological Process
GO:0080147 root hair cell development Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
KEGG gene cross-reference
ath:AT1G68810
ath:AT2G40200
ath:AT2G41130
ath:AT3G25710
ath:AT3G56770
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.973
Rank 1 · TkA04G170210 · TK1151
Cytoplasm0.094
Rank 2 · TkA04G170210 · TK1151
Cell membrane0.025
Rank 3 · TkA04G170210 · TK1151
Endoplasmic reticulum0.015
Rank 4 · TkA04G170210 · TK1151
Plastid0.011
Rank 5 · TkA04G170210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28369RP9_C49-67 aa
PF23177bHLH_IRO356-113 aa
PF00010HLH57-104 aa
PF02346Vac_Fusion58-88 aa
PF23179bHLH_INO259-113 aa
PF23183bHLH_NPAS462-86 aa
PF23173bHLH_SAC5163-112 aa
PF29569DCT6_helical65-114 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G170210PF28369RP9_C49675.48.1
TkA04G170210PF23177bHLH_IRO3561132.1e-0525.5
TkA04G170210PF00010HLH571042e-1144.2
TkA04G170210PF02346Vac_Fusion58880.2512.0
TkA04G170210PF23179bHLH_INO2591130.1812.7
TkA04G170210PF23183bHLH_NPAS462860.004717.6
TkA04G170210PF23173bHLH_SAC51631120.001619.0
TkA04G170210PF29569DCT6_helical651140.02415.2
TkA04G170210PF22754bHLH-TF_ACT-like_plant891040.003818.0
TkA04G170210PF18515Rh51082290.007716.2
TkA04G170210PF28369RP9_C1231375.48.1
TkA04G170210PF02346Vac_Fusion1341690.2512.0
TkA04G170210PF22754bHLH-TF_ACT-like_plant1432030.003818.0
TkA04G170210PF23177bHLH_IRO31521642.1e-0525.5
TkA04G170210PF00010HLH1551672e-1144.2
TkA04G170210PF29569DCT6_helical1612080.02415.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LS08Arabidopsis thalianasp|Q9LS08|BH032_ARATH Transcription factor AIG145.500%Swiss-ProtMedium
Q9S7Y1Arabidopsis thalianasp|Q9S7Y1|BH030_ARATH Transcription factor bHLH3037.000%Swiss-ProtMedium
Q9LET0Arabidopsis thalianasp|Q9LET0|BH107_ARATH Putative transcription factor bHLH10739.700%Swiss-ProtMedium
O80674Arabidopsis thalianasp|O80674|BH106_ARATH Transcription factor bHLH10640.600%Swiss-ProtMedium
P0CB25Arabidopsis thalianasp|P0CB25|BH131_ARATH Transcription factor bHLH13135.000%Swiss-ProtMedium

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