TkA04G169570 | RubberDandelionOmics

Gene overview

TkA04G169570

Reference: TK1151 Chr: Chr04 Coordinates: 43795925-43799662 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2027 bp · TkA04G169570|TK1151|cDNA

TCATTCCCATGAAAAGATGACGTCAGATAAAATGTGGAAAAATTCCTCACACGATACAAATTATCAATAGAAAGCAATTTTATGGTTCCAAATCTGAAAATGTATTTCACATCTGTGGGTCCAACAAAAACCTGTTGAGGAGACGCATGTTCCAACGATCACAACCGTCGACATGCCACCCAAAACGATCGTTATTCGTGAGCCGGCAGACGACGTTTCAAGATCCCCCCCGCCGAACCTCCCACCGGAATCAAGTCCCT...

CDS

Download CDS FASTA

1704 bp · TkA04G169570|TK1151|CDS

ATGTCCAAGCAAACATTCACAGTATGTCTCTGTTTCAGACGACGTTTCAAGATCCCCCCCGCCGAACCTCCCACCGGAATCAAGTCCCTATTCAATAACTATTCAGCTAACGATCTGATGACCGCCGATCACCTCCAACGCTTCCTGGTTGAGGTTCAGAAACACGAGAAAGCTACGATCGAGGAAGCTGAAGCAATTATTACGCAGAATTCCCCTTCTCTCTTCCACCGCAAGGGTTTCAATCTCGAAGCCTTCTTCAA...

Protein

Download Protein FASTA

567 aa · TkA04G169570|TK1151|PROTEIN

MSKQTFTVCLCFRRRFKIPPAEPPTGIKSLFNNYSANDLMTADHLQRFLVEVQKHEKATIEEAEAIITQNSPSLFHRKGFNLEAFFKYIFGASNSVLSPSGSAHQDMTAPLSHYYIYTGHNSYLTGNQLNSDCSDVPIIQALQRGVRVIELDIWPNSTKDDVDVLHGGTLTTPVELRTCLKSIKNHAFSVSEYPVVITLEDHLTTDLQAKVAEMVHEIYGDTLFTPEKECLEEFPSPETLKKRFIISTKPPKEYLKAKGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G169570`
TK1151 ID	TkA04G169570
OH-1004 ID	LXL04_035090
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G169570

Location Chr04:43795925-43799662 (+)

Description Similar to PLC2: Phosphoinositide phospholipase C 2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g08510`	The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	N-terminal EF-hand-like domain is required for phosphoinositide-specific phospholipase C activity in Arabidopsis thaliana.2001 · DOI: 10.1016/s0014-5793(01)02453-x
`At3g55940`	The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	No verified direct reference in this release
`At2g40116`	The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	No verified direct reference in this release
`At5g58700`	The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	No verified direct reference in this release
`At5g58670`	The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	Arabidopsis PLC1 is required for secondary responses to abscisic acid signals.2001 · DOI: 10.1105/tpc.13.5.1143 A gene encoding a phosphatidylinositol-specific phospholipase C is induced by dehydration and salt stress in Arabidopsis thaliana.1995 · DOI: 10.1073/pnas.92.9.3903

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035090 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0009553 embryo sac development Biological Process

GO:0009556 microsporogenesis Biological Process

GO:0010601 positive regulation of auxin biosynthetic process Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0048015 phosphatidylinositol-mediated signaling Biological Process

GO:0048437 floral organ development Biological Process

GO:0051209 release of sequestered calcium ion into cytosol Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT2G40116

ath:AT3G08510

ath:AT3G55940

ath:AT5G58690

ath:AT5G58700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.482

Rank 1 · TkA04G169570 · TK1151

Cytoplasm0.424

Rank 2 · TkA04G169570 · TK1151

Nucleus0.182

Rank 3 · TkA04G169570 · TK1151

Endoplasmic reticulum0.076

Rank 4 · TkA04G169570 · TK1151

Golgi apparatus0.063

Rank 5 · TkA04G169570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09279EF-hand_like27-98 aa

PF23617EF-hand_1528-94 aa

PF23583EF_HAND_2_PLCG38-97 aa

PF10022BcGHD61-102 aa

PF00388PI-PLC-X107-249 aa

PF04889Cwf_Cwc_15264-298 aa

PF06524NOA36267-298 aa

PF00387PI-PLC-Y332-417 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G169570	`PF09279`	EF-hand_like	27	98	9.9e-05	23.5
TkA04G169570	`PF23617`	EF-hand_15	28	94	0.21	12.5
TkA04G169570	`PF23583`	EF_HAND_2_PLCG	38	97	0.13	13.3
TkA04G169570	`PF10022`	BcGHD	61	102	0.5	10.1
TkA04G169570	`PF00388`	PI-PLC-X	107	249	6.6e-53	179.0
TkA04G169570	`PF04889`	Cwf_Cwc_15	264	298	0.1	13.1
TkA04G169570	`PF06524`	NOA36	267	298	9.2	6.2
TkA04G169570	`PF00387`	PI-PLC-Y	332	417	8.5e-30	104.1
TkA04G169570	`PF10022`	BcGHD	387	409	0.5	10.1
TkA04G169570	`PF10022`	BcGHD	442	463	0.5	10.1
TkA04G169570	`PF00168`	C2	459	540	1.5e-15	58.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q39033`	Arabidopsis thaliana	sp\|Q39033\|PLCD2_ARATH Phosphoinositide phospholipase C 2	66.200%	Swiss-Prot	High
`Q9LY51`	Arabidopsis thaliana	sp\|Q9LY51\|PLCD7_ARATH Phosphoinositide phospholipase C 7	66.200%	Swiss-Prot	High
`Q8GV43`	Arabidopsis thaliana	sp\|Q8GV43\|PLCD6_ARATH Phosphoinositide phospholipase C 6	54.300%	Swiss-Prot	High
`Q944C1`	Arabidopsis thaliana	sp\|Q944C1\|PLCD4_ARATH Phosphoinositide phospholipase C 4	51.500%	Swiss-Prot	High
`Q39032`	Arabidopsis thaliana	sp\|Q39032\|PLCD1_ARATH Phosphoinositide phospholipase C 1	52.300%	Swiss-Prot	High

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