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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G167090
Reference: TK1151 Chr: Chr04 Coordinates: 43185195-43188592 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2671 bp · TkA04G167090|TK1151|cDNA

CAAGCATCGTCTCTATCACTACAAAACCTTCTTTCATGACTATCTCATCCCAACTGTTTAATTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCCTCCTTTCATGGAGTCCAATTTCAACCAAAAGACTCCTAATCACTCAAACCCCTTTGACCAATCCAACATTCCCTTGAAGAAAAGAGAAAAATGGAAGACAAATACAAATAAGACACACTGTTTCACGTTATTTCTTCACCTACTAATTTCCATCCTCATTCACCCAC...

CDS

Download CDS FASTA

2382 bp · TkA04G167090|TK1151|CDS

ATGGAGTCCAATTTCAACCAAAAGACTCCTAATCACTCAAACCCCTTTGACCAATCCAACATTCCCTTGAAGAAAAGAGAAAAATGGAAGACAAATACAAATAAGACACACTGTTTCACGTTATTTCTTCACCTACTAATTTCCATCCTCATTCACCCACTTCCTGTCGTAAGTCAATCATGGGATGGAATCATCGTCACCGAATCAGATTTTCAAGCCCTCCAATCTTTCAAACAAGAACTCATTGACCCAAATGGGTT...

Protein

Download Protein FASTA

793 aa · TkA04G167090|TK1151|PROTEIN

MESNFNQKTPNHSNPFDQSNIPLKKREKWKTNTNKTHCFTLFLHLLISILIHPLPVVSQSWDGIIVTESDFQALQSFKQELIDPNGFLKSWNDSGYGACSGRWEGIKCAQGQVIVIQLPWRGLGGRISPKIGQFQALRKLSLHDNSIGGSIPKELGFLPNLRGLQLFNNKFTGSIPPALGSCPLLQTIDLGNNSLVGTIPESLANCSKLYRVNFTYNSLTGSIPAPLTKLNSLQFLALQFNNLSGVLPDSWGNDKNGVKF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G167090
TK1151 IDTkA04G167090
OH-1004 IDLXL04_035108
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G167090
LocationChr04:43185195-43188592 (+)
DescriptionSimilar to IMK3: Probable leucine-rich repeat receptor-like protein kinase IMK3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g56100 Can phosphorylate AGL24. No verified direct reference in this release
At3g51740 Probably inactive leucine-rich repeat receptor-like protein kinase IMK2. No verified direct reference in this release
At2g26730 Probable inactive receptor kinase At2g26730. No verified direct reference in this release
At1g68400 Probable leucine-rich repeat receptor-like protein kinase At1g68400. No verified direct reference in this release
At3g24660 Does not seem to have conserved a kinase activity. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035108 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005777 peroxisome Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G68400
ath:AT2G26730
ath:AT3G51740
ath:AT3G56100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.888
Rank 1 · TkA04G167090 · TK1151
Endoplasmic reticulum0.081
Rank 2 · TkA04G167090 · TK1151
Cytoplasm0.064
Rank 3 · TkA04G167090 · TK1151
Nucleus0.044
Rank 4 · TkA04G167090 · TK1151
Lysosome / Vacuole0.020
Rank 5 · TkA04G167090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_269-108 aa
PF23598LRR_14128-238 aa
PF13855LRR_8134-171 aa
PF12799LRR_4136-171 aa
PF00560LRR_1137-158 aa
PF13516LRR_6137-149 aa
PF12799LRR_4159-199 aa
PF13516LRR_6159-173 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G167090PF08263LRRNT_2691088.9e-1142.6
TkA04G167090PF23598LRR_141282382e-1247.3
TkA04G167090PF13855LRR_81341713.3e-2278.7
TkA04G167090PF12799LRR_41361711.6e-2073.4
TkA04G167090PF00560LRR_11371581.4e-2996.5
TkA04G167090PF13516LRR_61371490.5711.1
TkA04G167090PF12799LRR_41591991.6e-2073.4
TkA04G167090PF13516LRR_61591730.5711.1
TkA04G167090PF00560LRR_11601821.4e-2996.5
TkA04G167090PF24141LRR_ComC1672053.5e-0524.4
TkA04G167090PF13516LRR_61821940.5711.1
TkA04G167090PF13855LRR_81842433.3e-2278.7
TkA04G167090PF00560LRR_11852061.4e-2996.5
TkA04G167090PF24141LRR_ComC2052533.5e-0524.4
TkA04G167090PF13516LRR_62062210.5711.1
TkA04G167090PF00560LRR_12092301.4e-2996.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
C0LGP9Arabidopsis thalianasp|C0LGP9|IMK3_ARATH Probable leucine-rich repeat receptor-like protein kinase IMK374.200%Swiss-ProtHigh
Q9SCT4Arabidopsis thalianasp|Q9SCT4|IMK2_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase IMK269.000%Swiss-ProtHigh
O48788Arabidopsis thalianasp|O48788|Y2267_ARATH Probable inactive receptor kinase At2g2673046.700%Swiss-ProtLow
Q9M9C5Arabidopsis thalianasp|Q9M9C5|Y1680_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g6840048.300%Swiss-ProtLow
P33543Arabidopsis thalianasp|P33543|TMKL1_ARATH Putative kinase-like protein TMKL146.700%Swiss-ProtLow

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