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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G166860
Reference: TK1151 Chr: Chr04 Coordinates: 43120336-43121949 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

825 bp · TkA04G166860|TK1151|cDNA

ATGATGAATTTCAACCGGAATAGACGTAGAAAAAGTCAACGACAAGCAAAGTTTGCTTTGAGAAGATTTGCGAATGATTCTTCAAATCCAGTTGAAGTTGGAAACTCGGATGATGAGAATCAAAACAATGTTGATAATCAAAACATGATGATCGATCCTCCTATCAACGTGATCAATCCTGAAGTCAACGATGAGAACAATCCTGAAGTCAACAATGAGAACAATCCTGAAGTCAACAATGAGAACATAGATGAAGACTT...

CDS

Download CDS FASTA

825 bp · TkA04G166860|TK1151|CDS

ATGATGAATTTCAACCGGAATAGACGTAGAAAAAGTCAACGACAAGCAAAGTTTGCTTTGAGAAGATTTGCGAATGATTCTTCAAATCCAGTTGAAGTTGGAAACTCGGATGATGAGAATCAAAACAATGTTGATAATCAAAACATGATGATCGATCCTCCTATCAACGTGATCAATCCTGAAGTCAACGATGAGAACAATCCTGAAGTCAACAATGAGAACAATCCTGAAGTCAACAATGAGAACATAGATGAAGACTT...

Protein

Download Protein FASTA

274 aa · TkA04G166860|TK1151|PROTEIN

MMNFNRNRRRKSQRQAKFALRRFANDSSNPVEVGNSDDENQNNVDNQNMMIDPPINVINPEVNDENNPEVNNENNPEVNNENIDEDLNMNIDANEEVSDTEEEMDENQLNIVVHNIQATSGNQNEEVDDESMAQKEARTRNLLQISEKDTNAKLSTHKKIGWTKGKVRKLIQSTTTVKEVGTSTSGRKRKREYKGEKRTSTRKNTNPYASITPFKGFRTKEMTKRIRSNEKLKKDQKATKRLTPRKKTIQQKEKKLTESA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G166860
TK1151 IDTkA04G166860
OH-1004 IDLXL04_016231
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)88.700
Protein coverage (%)TK1151 93.796 / OH-1004 19.643
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G166860
LocationChr04:43120336-43121949 (-)
DescriptionSimilar to hmu: Halomucin (Haloquadratum walsbyi (strain DSM 16790 / HBSQ001)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016231 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0007156 homophilic cell-cell adhesion Biological Process
GO:0019079 viral genome replication Biological Process
GO:0019082 viral protein processing Biological Process
GO:0032259 methylation Biological Process
GO:0039502 symbiont-mediated suppression of host type I interferon-mediated signaling pathway Biological Process
GO:0039520 symbiont-mediated activation of host autophagy Biological Process
GO:0039548 symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of IRF3 activity Biological Process
GO:0039579 symbiont-mediated suppression of host ISG15-protein conjugation Biological Process
GO:0039595 symbiont-mediated degradation of host mRNA Biological Process
GO:0039648 symbiont-mediated perturbation of host ubiquitin-like protein modification Biological Process
GO:0039657 symbiont-mediated suppression of host gene expression Biological Process
KEGG gene cross-reference
hwa:HQ_1081A
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.954
Rank 1 · TkA04G166860 · TK1151
Cytoplasm0.143
Rank 2 · TkA04G166860 · TK1151
Mitochondrion0.018
Rank 3 · TkA04G166860 · TK1151
Cell membrane0.015
Rank 4 · TkA04G166860 · TK1151
Extracellular0.007
Rank 5 · TkA04G166860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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