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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G166160
Reference: TK1151 Chr: Chr04 Coordinates: 42935415-42939447 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1495 bp · TkA04G166160|TK1151|cDNA

TAAACTAAGAAAGGTGTTTTAATGAACAGCAAGACCCAGAAGAAATGGATATGGATACCGTCAAGAAACAAGCTGCCGAACTCGAAAAAGAACTAATTACTAAGGAACAAGAAACCCTGGAAGTGCTACGAGAACTCGAATTTGCCAAAGGAGTCATGGAGGGTTTAAAACTCAACCTAAACAAAGAAACTTCATCAATCATCACATCCCTAAATCTAAACCCAGATTCACGACCTACCACACCAGTTGATCAGTCAACA...

CDS

Download CDS FASTA

1479 bp · TkA04G166160|TK1151|CDS

ATGGACCGAACCCTACAATCACCGAATGTTGCAGACAATTGTACGCCGATTTCAGAGATGAATCCTAGGGTTGAGATTGATACATCGCCGCCGTTTGGGTCGGTGAAGGAGGCGGTGACTCGGTTCGGTGGAAGTGGTTCGTGGGTTCCCCTTAATGTCCTTCGACTCGCCGGGCAAGACCCAGAAGAAATGGATATGGATACCGTCAAGAAACAAGCTGCCGAACTCGAAAAAGAACTAATTACTAAGGAACAAGAAAC...

Protein

Download Protein FASTA

492 aa · TkA04G166160|TK1151|PROTEIN

MDRTLQSPNVADNCTPISEMNPRVEIDTSPPFGSVKEAVTRFGGSGSWVPLNVLRLAGQDPEEMDMDTVKKQAAELEKELITKEQETLEVLRELEFAKGVMEGLKLNLNKETSSIITSLNLNPDSRPTTPVDQSTPTLTLCPVPLPPGIILTELKEAKSNLNKTTKDLTMIRASVESLNKKLRTHKSNLAEKDGETKRVIEESVDTTNGFCKLTFEGQQFRRMEEAAQYEVIKATSEIENTKLSIKMVEMRLIAAKKMEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G166160
TK1151 IDTkA04G166160
OH-1004 IDLXL04_035119
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G166160
LocationChr04:42935415-42939447 (-)
DescriptionSimilar to At2g40480: WEB family protein At2g40480
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g40480 WEB family protein At2g40480. No verified direct reference in this release
At3g51720 WEB family protein At3g51720. No verified direct reference in this release
At2g38370 WEB family protein At2g38370. No verified direct reference in this release
At3g56270 WEB family protein At3g56270. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035119 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009903 chloroplast avoidance movement Biological Process
GO:0009904 chloroplast accumulation movement Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT2G38370
ath:AT2G40480
ath:AT3G51720
ath:AT3G56270
ath:AT4G33390
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.393
Rank 1 · TkA04G166160 · TK1151
Cell membrane0.368
Rank 2 · TkA04G166160 · TK1151
Nucleus0.340
Rank 3 · TkA04G166160 · TK1151
Plastid0.063
Rank 4 · TkA04G166160 · TK1151
Endoplasmic reticulum0.054
Rank 5 · TkA04G166160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05701WEMBL24-110 aa
PF24918NET2A_C58-121 aa
PF30081MAL13P1_147_C62-109 aa
PF12761End364-86 aa
PF21664TBPIP_C64-99 aa
PF00875DNA_photolyase69-94 aa
PF05701WEMBL152-305 aa
PF24918NET2A_C153-206 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G166160PF05701WEMBL241106.4e-2691.9
TkA04G166160PF24918NET2A_C581212.78.5
TkA04G166160PF30081MAL13P1_147_C621091.69.7
TkA04G166160PF12761End364860.006617.3
TkA04G166160PF21664TBPIP_C64990.1113.1
TkA04G166160PF00875DNA_photolyase69940.9710.1
TkA04G166160PF05701WEMBL1523056.4e-2691.9
TkA04G166160PF24918NET2A_C1532062.78.5
TkA04G166160PF12761End31561910.006617.3
TkA04G166160PF00875DNA_photolyase1682360.9710.1
TkA04G166160PF21664TBPIP_C1742270.1113.1
TkA04G166160PF00576Transthyretin1792400.3612.2
TkA04G166160PF30081MAL13P1_147_C1882501.69.7
TkA04G166160PF00875DNA_photolyase4104400.9710.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q5XVC7Arabidopsis thalianasp|Q5XVC7|Y2048_ARATH WEB family protein At2g4048032.300%Swiss-ProtMedium
Q9SCT6Arabidopsis thalianasp|Q9SCT6|Y3172_ARATH WEB family protein At3g5172034.100%Swiss-ProtMedium
F4ISY0Arabidopsis thalianasp|F4ISY0|Y2837_ARATH WEB family protein At2g3837031.100%Swiss-ProtMedium
Q9LYL6Arabidopsis thalianasp|Q9LYL6|Y3270_ARATH WEB family protein At3g5627027.900%Swiss-ProtLow

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