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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G160100
Reference: TK1151 Chr: Chr04 Coordinates: 41361345-41364831 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2056 bp · TkA04G160100|TK1151|cDNA

GTTCGATTTGCCCCCTTCTTCTAAAACCCTCTTGTTCGAGAGAACCCTAAATTGAAGCAGAGTGGATAGAGAGTGGGGAAGATGTCGTCGACGCTGTTAGAGCTGACTCGAGCGGCTCACGAGGAAACTGAGAAGTTGGAGAGACTGATAGTGAAGGATCTGCAGAATGAACCGGCTTCGAACAAGGATCGCCTCTCCCAAAGCCACCGTGTGCGCCATATGATCGACCAAATCACCACCACTACTTACAAGATTATTGA...

CDS

Download CDS FASTA

1536 bp · TkA04G160100|TK1151|CDS

ATGTCGTCGACGCTGTTAGAGCTGACTCGAGCGGCTCACGAGGAAACTGAGAAGTTGGAGAGACTGATAGTGAAGGATCTGCAGAATGAACCGGCTTCGAACAAGGATCGCCTCTCCCAAAGCCACCGTGTGCGCCATATGATCGACCAAATCACCACCACTACTTACAAGATTATTGAGATTTATGAAGACAAAGACAATGCAAGGAAGGATGAAATTGCAGCCCTTGGTGGACAAACTGCATCTGGGACGACTAATGT...

Protein

Download Protein FASTA

511 aa · TkA04G160100|TK1151|PROTEIN

MSSTLLELTRAAHEETEKLERLIVKDLQNEPASNKDRLSQSHRVRHMIDQITTTTYKIIEIYEDKDNARKDEIAALGGQTASGTTNVFSAFYDRLKEIREYHRRHPSARVIDTTDEYEELLQEEPQVEFSGEEAHGRYLDMHELYNDYINSKFGKHLDYTSYLEVFSQPHTIPRKLKMTRQYREYLSKMVEYLVYFIERTEPLQDLDRLFLKVSSEFEEQWANGKVDGWKDEVKDNGHVSDEHTSIDLDYYSTVEELVEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G160100
TK1151 IDTkA04G160100
OH-1004 IDLXL04_035173
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G160100
LocationChr04:41361345-41364831 (+)
DescriptionSimilar to ATO: Splicing factor SF3a60 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g06160 Splicing factor homolog to SF3a60 that may be involved in pre-spliceosome formation. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035173 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000278 mitotic cell cycle Biological Process
GO:0000375 RNA splicing, via transesterification reactions Biological Process
GO:0000387 spliceosomal snRNP assembly Biological Process
GO:0000389 mRNA 3'-splice site recognition Biological Process
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0006397 mRNA processing Biological Process
GO:0009566 fertilization Biological Process
GO:0045292 mRNA cis splicing, via spliceosome Biological Process
GO:0045694 regulation of embryo sac egg cell differentiation Biological Process
GO:1903241 U2-type prespliceosome assembly Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
KEGG gene cross-reference
ath:AT5G06160
dme:Dmel_CG2925
hsa:10946
mmu:75062
spo:2540932
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.901
Rank 1 · TkA04G160100 · TK1151
Cytoplasm0.175
Rank 2 · TkA04G160100 · TK1151
Mitochondrion0.023
Rank 3 · TkA04G160100 · TK1151
Cell membrane0.017
Rank 4 · TkA04G160100 · TK1151
Endoplasmic reticulum0.009
Rank 5 · TkA04G160100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19755DUF624229-75 aa
PF12108SF3a60_bindingd83-107 aa
PF16837SF3A3128-176 aa
PF16837SF3A3176-195 aa
PF26098Phage_Inh_C178-200 aa
PF13297SDE2_2C225-305 aa
PF21650DnaG_cat_HB225-236 aa
PF26098Phage_Inh_C227-255 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G160100PF19755DUF624229750.05514.5
TkA04G160100PF12108SF3a60_bindingd831072.5e-1247.2
TkA04G160100PF16837SF3A31281761.4e-1661.0
TkA04G160100PF16837SF3A31761951.4e-1661.0
TkA04G160100PF26098Phage_Inh_C1782000.6110.7
TkA04G160100PF13297SDE2_2C2253052.1e-29102.0
TkA04G160100PF21650DnaG_cat_HB2252360.09713.5
TkA04G160100PF26098Phage_Inh_C2272550.6110.7
TkA04G160100PF11931SF3a60_Prp9_C3503711.2e-54184.7
TkA04G160100PF19755DUF62423813980.05514.5
TkA04G160100PF11931SF3a60_Prp9_C3925111.2e-54184.7
TkA04G160100PF26098Phage_Inh_C4024080.6110.7
TkA04G160100PF06397Desulfoferrod_N4134230.09613.0
TkA04G160100PF21650DnaG_cat_HB4314620.09713.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FG01Arabidopsis thalianasp|Q9FG01|ATO_ARATH Splicing factor SF3a60 homolog70.900%Swiss-ProtHigh

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