TkA04G148390 | RubberDandelionOmics

Gene overview

TkA04G148390

Reference: TK1151 Chr: Chr04 Coordinates: 38449763-38451150 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

924 bp · TkA04G148390|TK1151|cDNA

ATACAGTTGGGCAACCTATACCCATCAACTACAGCTTTCGTCCTTTCCAACACGTTACTTGCCCTCATACCCATCACTCCAACTCTCTCTTCAACTCCAATCATCACTAATCCTCCATCTTTCTACTCCTACCTTCTTTAATTTCCACTGATATGACAACCGAAGAAGTCCAGAAGGTTGAGGTTGAACCCGAGTGCCCGGCGGAGCCACCACCACCACCTGCCGCCGAGGTCGAGGAGAAAGCTATCGTCCCAGTTGAA...

CDS

Download CDS FASTA

573 bp · TkA04G148390|TK1151|CDS

ATGACAACCGAAGAAGTCCAGAAGGTTGAGGTTGAACCCGAGTGCCCGGCGGAGCCACCACCACCACCTGCCGCCGAGGTCGAGGAGAAAGCTATCGTCCCAGTTGAACCTCCTCTTACGGAAGAAAAGCCCGAAGATGATTCCAAAGCACTTGCCATCGTTGAAAAGCCTACCGAGGATAAATCGGAAGAGGGTTCCGTCAATAGAGATGCTGTTCTCGCTAGGGTTTCCACAGAGAAGAAAGATGCACTAGTCAGAGC...

Protein

Download Protein FASTA

190 aa · TkA04G148390|TK1151|PROTEIN

MTTEEVQKVEVEPECPAEPPPPPAAEVEEKAIVPVEPPLTEEKPEDDSKALAIVEKPTEDKSEEGSVNRDAVLARVSTEKKDALVRAWEESEKAKADNKAQQKLASIGAWENSRKADIEAELKKIEENLEKKKSKYIQKMKNQIAVLHKKAEEKRANTEAKRGEALLKAEEVAAKCRATGDTPKKGWFSS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G148390`
TK1151 ID	TkA04G148390
OH-1004 ID	LXL04_035269
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G148390

Location Chr04:38449763-38451150 (-)

Description Similar to Remorin

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g45820`	Exhibits a non sequence-specific DNA-binding activity.	No verified direct reference in this release
`At3g61260`	Uncharacterized protein At3g61260.	No verified direct reference in this release
`At5g23750`	Remorin 1.4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035269 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007267 cell-cell signaling Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0010555 response to mannitol Biological Process

GO:0051607 defense response to virus Biological Process

GO:0051665 membrane raft localization Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT2G41870

ath:AT2G45820

ath:AT3G61260

ath:AT5G23750

sot:102577743

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.502

Rank 1 · TkA04G148390 · TK1151

Cytoplasm0.346

Rank 2 · TkA04G148390 · TK1151

Nucleus0.212

Rank 3 · TkA04G148390 · TK1151

Endoplasmic reticulum0.057

Rank 4 · TkA04G148390 · TK1151

Mitochondrion0.046

Rank 5 · TkA04G148390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03766Remorin_N11-37 aa

PF03766Remorin_N28-76 aa

PF21173DksA-like_N36-47 aa

PF03763Remorin_C80-185 aa

PF07851TMEM120A-B91-157 aa

PF22175Ogg-HhH93-161 aa

PF10206WRW97-148 aa

PF27291AF_1457103-150 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G148390	`PF03766`	Remorin_N	11	37	6.4e-15	55.6
TkA04G148390	`PF03766`	Remorin_N	28	76	6.4e-15	55.6
TkA04G148390	`PF21173`	DksA-like_N	36	47	0.025	15.4
TkA04G148390	`PF03763`	Remorin_C	80	185	7.7e-33	113.2
TkA04G148390	`PF07851`	TMEM120A-B	91	157	10.0	6.0
TkA04G148390	`PF22175`	Ogg-HhH	93	161	0.13	12.5
TkA04G148390	`PF10206`	WRW	97	148	0.1	13.6
TkA04G148390	`PF27291`	AF_1457	103	150	0.094	13.7
TkA04G148390	`PF21173`	DksA-like_N	113	135	0.025	15.4
TkA04G148390	`PF03766`	Remorin_N	124	134	6.4e-15	55.6
TkA04G148390	`PF03766`	Remorin_N	148	154	6.4e-15	55.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80837`	Arabidopsis thaliana	sp\|O80837\|REMO_ARATH Remorin	52.800%	Swiss-Prot	High
`Q9M2D8`	Arabidopsis thaliana	sp\|Q9M2D8\|Y3126_ARATH Uncharacterized protein At3g61260	52.400%	Swiss-Prot	High
`Q9FFA5`	Arabidopsis thaliana	sp\|Q9FFA5\|RMR14_ARATH Remorin 1.4	38.700%	Swiss-Prot	Medium

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