TkA04G144560 | RubberDandelionOmics

Gene overview

TkA04G144560

Reference: TK1151 Chr: Chr04 Coordinates: 37454297-37457533 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1544 bp · TkA04G144560|TK1151|cDNA

TAAGAGGTCTCCACGTGTCCACTCTCTTGAACGCTCTTCACGAGATTCTCTTTTCCTTCCCCACTCCCTATTCTATCTTCGTCCTTGCCACGTCCTTCATTTTTATCAATCATCACTGTATCACAACCAACTCCTCATACCAATTAAATCCCCAAATCCATCAAAATCATCTTCGTTTTTCGTTCCTCCATGATCCTCTCTGCATCATCAGATACGCATATTTCACTCCAACAGCCATAGCCTGAATACCCAATCACCAT...

CDS

Download CDS FASTA

1032 bp · TkA04G144560|TK1151|CDS

ATGGCAATACGTCCTCGTCTACCGCTGCTTCTCGTTGCATTCTTGTGTTTTGTTGGAGGTCTTAGCGCGAGTGACGGCGACGCTGATCCGATTTACATAGATTGTGTTGAGCAATGCGAGAAGACAGGATGTGTGGGGGATGTGTGCTTCCAACACTGCAACTTGACATCTGATGGGAAGTCTGTGAGTGATCCATGGTACCTTCAAGAGCCACTGTACATAAAATGGAAAAAATGGGACTGCCTTAGTGGCTGCAGATA...

Protein

Download Protein FASTA

343 aa · TkA04G144560|TK1151|PROTEIN

MAIRPRLPLLLVAFLCFVGGLSASDGDADPIYIDCVEQCEKTGCVGDVCFQHCNLTSDGKSVSDPWYLQEPLYIKWKKWDCLSGCRYQCMLVREEERETAGDTPVKYHGKWPLRRAFGIEEPVSVALSALNLAVQFHGWVSFFILVNYKLPLKPNRQTYYEYIGLWHVYGTLSMNFLFWSAVYHSRDVEMTEKLDYSSAAAIIGFSLIVSIIRAFNVRSEATRVMVSAPLIAFVTTHILYLNCYQFDYGLNLKVCVTMGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G144560`
TK1151 ID	TkA04G144560
OH-1004 ID	LXL04_035300
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	91.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA04G144560`
Location	Chr04:37454297-37457533 (+)
Description	Similar to pgap3: Post-GPI attachment to proteins factor 3
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_035300` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006505 GPI anchor metabolic process Biological Process GO:0006506 GPI anchor biosynthetic process Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0031410 cytoplasmic vesicle Cellular Component GO:0016788 hydrolase activity, acting on ester bonds Molecular Function
KEGG gene cross-reference	dre:100136873 hsa:93210 mmu:320655 xla:447380 xtr:779696 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.346

Rank 1 · TkA04G144560 · TK1151

Cell membrane0.209

Rank 2 · TkA04G144560 · TK1151

Golgi apparatus0.176

Rank 3 · TkA04G144560 · TK1151

Lysosome / Vacuole0.163

Rank 4 · TkA04G144560 · TK1151

Cytoplasm0.119

Rank 5 · TkA04G144560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04080Per171-330 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G144560	`PF04080`	Per1	71	330	2.8e-85	286.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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