TkA04G139520 | RubberDandelionOmics

Gene overview

TkA04G139520

Reference: TK1151 Chr: Chr04 Coordinates: 36145545-36146117 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

516 bp · TkA04G139520|TK1151|cDNA

ATGGTGATTTACGAGATAAAAACCGAGTCGATGGAAGTAACGGAGCAGGCTTCGAGTACGGACCAGTCATCAGAAGTGACGGCTCCGGTGGAGGAAACTGCCGCAACTTCGGTGTCGACGGTACAATCACCGGTGAAGGGAAAGCACTACAGGGGTGTGAGGCAGCGGCCGTGGGGGAAATTCGCGGCGGAAATAAGAGACCCGGCGAAAAATGGAGCGAGAGTCTGGCTCGGAACCTATGAAACGGCGGAGGAAGCGGC...

CDS

Download CDS FASTA

516 bp · TkA04G139520|TK1151|CDS

ATGGTGATTTACGAGATAAAAACCGAGTCGATGGAAGTAACGGAGCAGGCTTCGAGTACGGACCAGTCATCAGAAGTGACGGCTCCGGTGGAGGAAACTGCCGCAACTTCGGTGTCGACGGTACAATCACCGGTGAAGGGAAAGCACTACAGGGGTGTGAGGCAGCGGCCGTGGGGGAAATTCGCGGCGGAAATAAGAGACCCGGCGAAAAATGGAGCGAGAGTCTGGCTCGGAACCTATGAAACGGCGGAGGAAGCGGC...

Protein

Download Protein FASTA

171 aa · TkA04G139520|TK1151|PROTEIN

MVIYEIKTESMEVTEQASSTDQSSEVTAPVEETAATSVSTVQSPVKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAAIAYDRAAYRMRGSKALLNFPDRIGLNEPEPVRVTSKRRSPEPSTLLSSASESVAGSSKKRNNKVSAALLVEREVQSRSSNELKI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G139520`
TK1151 ID	TkA04G139520
OH-1004 ID	LXL04_035349
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.800
Protein coverage (%)	TK1151 97.661 / OH-1004 70.464 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G139520

Location Chr04:36145545-36146117 (-)

Description Similar to ERF2: Ethylene-responsive transcription factor 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g17500`	Acts as a transcriptional activator.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_035349 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0009624 response to nematode Biological Process

GO:0009835 fruit ripening Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010087 phloem or xylem histogenesis Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0051301 cell division Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT4G17500

nsy:104217398

nta:107769743

nta:107825044

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.952

Rank 1 · TkA04G139520 · TK1151

Cytoplasm0.111

Rank 2 · TkA04G139520 · TK1151

Cell membrane0.028

Rank 3 · TkA04G139520 · TK1151

Endoplasmic reticulum0.017

Rank 4 · TkA04G139520 · TK1151

Plastid0.016

Rank 5 · TkA04G139520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847AP249-100 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G139520	`PF00847`	AP2	49	100	4.1e-15	56.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80337`	Arabidopsis thaliana	sp\|O80337\|EF100_ARATH Ethylene-responsive transcription factor 1A	72.400%	Swiss-Prot	Medium

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