TkA04G139120 | RubberDandelionOmics

Gene overview

TkA04G139120

Reference: TK1151 Chr: Chr04 Coordinates: 36047691-36050679 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1980 bp · TkA04G139120|TK1151|cDNA

ATGGCCGAAGATGGTAAAATCAAAATTGACAAGTTTGATGGAACCGATTATGGATTTTGGAAGATGCAAATTGAAGATATGTTATATCAGAAAAGTTTGCATTTGCCTATGTTGGGCGAACAACCGGATGACATGTATGATGAAGAATGGAAGTCGTTGGATCGACAAGCCTTGGGTGTAGTTAGGCTTTCATTGGCAAAGAGTGTTGCGTATAACATTGTCAATGAAACAACTACTTATGGAGTATTTAAGGCTTTATC...

CDS

Download CDS FASTA

1980 bp · TkA04G139120|TK1151|CDS

ATGGCCGAAGATGGTAAAATCAAAATTGACAAGTTTGATGGAACCGATTATGGATTTTGGAAGATGCAAATTGAAGATATGTTATATCAGAAAAGTTTGCATTTGCCTATGTTGGGCGAACAACCGGATGACATGTATGATGAAGAATGGAAGTCGTTGGATCGACAAGCCTTGGGTGTAGTTAGGCTTTCATTGGCAAAGAGTGTTGCGTATAACATTGTCAATGAAACAACTACTTATGGAGTATTTAAGGCTTTATC...

Protein

Download Protein FASTA

659 aa · TkA04G139120|TK1151|PROTEIN

MAEDGKIKIDKFDGTDYGFWKMQIEDMLYQKSLHLPMLGEQPDDMYDEEWKSLDRQALGVVRLSLAKSVAYNIVNETTTYGVFKALSKMYEKTSASNKVFLIKQLVNTKMKESMSVTAHINEFNSIISRLASVAIKFEDEVQALLLLSSLPDSWSGTVTATLEEEVMENLPVLVLCYIQKVEEEGIIEDKIEAGQSLEKGGSPRTGRILNVGTTKKKWNPGLWIQVGVAISDPTRNPTRTQPENKPVVGSGLILSNRQPV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G139120`
TK1151 ID	TkA04G139120
OH-1004 ID	LXL04_037593
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	41.800
Protein coverage (%)	TK1151 99.241 / OH-1004 43.119 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G139120

Location Chr04:36047691-36050679 (+)

Description Similar to Retrovirus-related Pol polyprotein from transposon TNT 1-94

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`AtMg00710`	Uncharacterized mitochondrial protein AtMg00710.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037593 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006281 DNA repair Biological Process

GO:0006310 DNA recombination Biological Process

GO:0006508 proteolysis Biological Process

GO:0015074 DNA integration Biological Process

GO:0071897 DNA biosynthetic process Biological Process

GO:0042575 DNA polymerase complex Cellular Component

GO:0003676 nucleic acid binding Molecular Function

GO:0003964 RNA-directed DNA polymerase activity Molecular Function

GO:0004190 aspartic-type endopeptidase activity Molecular Function

GO:0004519 endonuclease activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.476

Rank 1 · TkA04G139120 · TK1151

Nucleus0.353

Rank 2 · TkA04G139120 · TK1151

Mitochondrion0.094

Rank 3 · TkA04G139120 · TK1151

Peroxisome0.055

Rank 4 · TkA04G139120 · TK1151

Endoplasmic reticulum0.054

Rank 5 · TkA04G139120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22936Pol_BBD5-31 aa

PF14223Retrotran_gag_227-161 aa

PF00665rve69-96 aa

PF11757RSS_P2090-141 aa

PF22936Pol_BBD268-288 aa

PF22936Pol_BBD290-323 aa

PF13976gag_pre-integrs351-414 aa

PF22936Pol_BBD388-423 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G139120	`PF22936`	Pol_BBD	5	31	1.9e-06	28.8
TkA04G139120	`PF14223`	Retrotran_gag_2	27	161	8.3e-27	94.7
TkA04G139120	`PF00665`	rve	69	96	0.0005	21.0
TkA04G139120	`PF11757`	RSS_P20	90	141	0.072	14.3
TkA04G139120	`PF22936`	Pol_BBD	268	288	1.9e-06	28.8
TkA04G139120	`PF22936`	Pol_BBD	290	323	1.9e-06	28.8
TkA04G139120	`PF13976`	gag_pre-integrs	351	414	7.9e-17	61.5
TkA04G139120	`PF22936`	Pol_BBD	388	423	1.9e-06	28.8
TkA04G139120	`PF00665`	rve	431	465	0.0005	21.0
TkA04G139120	`PF11757`	RSS_P20	455	489	0.072	14.3
TkA04G139120	`PF00665`	rve	463	499	0.0005	21.0
TkA04G139120	`PF29688`	TnsB_C	464	517	2.8e-06	27.9
TkA04G139120	`PF13683`	rve_3	488	521	4.2e-05	24.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P92512`	Arabidopsis thaliana	sp\|P92512\|M710_ARATH Uncharacterized mitochondrial protein AtMg00710	47.100%	Swiss-Prot	Low

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