Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3885 bp · TkA04G129750|TK1151|cDNA
ATTTATTACAGCTTATTATTTGATTTCTATATTTCATTGAACACCTCTAAATATTGATTTAATTCGATAGTATTGGGAGACGATTGTGCGAAAGCAAGGACTCTAATGTTCAGTTGCTGATTTGGTGCCCTAGCCCTAGACTTATCTTTCTTCGTAAATCTGTAAATCCTGTTAGTTTCTTCTAAATCTCCATAGCCATCCAGGACCTTGACCAATTTCGTGCACTTTTTTTGACTCTTTACAACCTCTCATCTTTTGTT...
564 bp · TkA04G129750|TK1151|CDS
ATGAAGATTACTGATACAAACAAGATCAACCATCCTAATGGCATAGAACATCCTGATGAACCAAAGAACACAGTGCCTTCTTCTTCCACTTCCATTGATGTGGAAAAATCTTCACACAGTTCTGATGAACATGAGAATAACAAGGTTAGTGTAGGAAACCAAAAGGAAATAGTGACTGAAACCAAAAAGAAAGAACTGGGAACTAACAATGATGGTGGTAAATCACCTGAAGAACCTTCAAAACCTTCTGAACAAGTTGT...
Protein
Download Protein FASTA187 aa · TkA04G129750|TK1151|PROTEIN
MKITDTNKINHPNGIEHPDEPKNTVPSSSTSIDVEKSSHSSDEHENNKVSVGNQKEIVTETKKKELGTNNDGGKSPEEPSKPSEQVVEEEKVENAPATVNVKDSSADDSDESDVVEHDVKVCDICGDAGREDLLAICCRCIDGAEHTYCMKKMIDQVPEGDWLCEECKSSEEKKTQTLPVKQIRNLL
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G129750 |
|---|---|
| TK1151 ID | TkA04G129750 |
| OH-1004 ID | LXL04_035451 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 92.500 |
| Protein coverage (%) | TK1151 93.048 / OH-1004 17.143Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G129750 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:33773717-33778590 (+) | |||||||||
| Description | Similar to BAZ2B: Bromodomain adjacent to zinc finger domain protein 2B | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0034244 negative regulation of transcription elongation by RNA polymerase II Biological Process GO:0045814 negative regulation of gene expression, epigenetic Biological Process GO:2000028 regulation of photoperiodism, flowering Biological Process GO:0000785 chromatin Cellular Component GO:0005634 nucleus Cellular Component GO:0003677 DNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0042393 histone binding Molecular Function GO:0061628 histone H3K27me3 reader activity Molecular Function GO:0140566 histone reader activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G43770 ath:AT5G16680 ath:AT5G61100 gga:395400 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF06556ASFV_p2732-67 aaPF01080Presenilin34-99 aaPF26054PHD_G2E3116-129 aaPF30716zf_Tbcl_5118-127 aaPF23011PHD-1st_NSD120-168 aaPF00628PHD122-167 aaPF23004PHDvar_NSD122-166 aaPF25054PHD_pln124-154 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G129750 | PF06556 | ASFV_p27 | 32 | 67 | 0.22 | 12.4 |
| TkA04G129750 | PF01080 | Presenilin | 34 | 99 | 7.1 | 6.0 |
| TkA04G129750 | PF26054 | PHD_G2E3 | 116 | 129 | 1.2 | 9.9 |
| TkA04G129750 | PF30716 | zf_Tbcl_5 | 118 | 127 | 0.027 | 14.7 |
| TkA04G129750 | PF23011 | PHD-1st_NSD | 120 | 168 | 0.17 | 12.7 |
| TkA04G129750 | PF00628 | PHD | 122 | 167 | 0.00062 | 20.5 |
| TkA04G129750 | PF23004 | PHDvar_NSD | 122 | 166 | 0.011 | 16.5 |
| TkA04G129750 | PF25054 | PHD_pln | 124 | 154 | 0.0097 | 16.5 |
| TkA04G129750 | PF26054 | PHD_G2E3 | 134 | 168 | 1.2 | 9.9 |
| TkA04G129750 | PF06556 | ASFV_p27 | 145 | 178 | 0.22 | 12.4 |
| TkA04G129750 | PF08646 | Rep_fac-A_C | 146 | 173 | 0.037 | 14.5 |
| TkA04G129750 | PF30716 | zf_Tbcl_5 | 157 | 181 | 0.027 | 14.7 |
| TkA04G129750 | PF23004 | PHDvar_NSD | 164 | 175 | 0.011 | 16.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.