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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G129330
Reference: TK1151 Chr: Chr04 Coordinates: 33661326-33664757 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3106 bp · TkA04G129330|TK1151|cDNA

TTATAAACTTATAATCCAATATTTTTATTCTATGCAGAATCTACAGAAGGAAGTAGAATCTTTAACAGAGAATGTTGTAAAAGCTGAAGCGGCTGCCTTAGCAACAGGAAAAACATATGAGGAGGAAAACAAAAAGGGAGAAGAGCTCGTGGCTCAGTTCCGAGATGCACAAAAAGTCTGCCAACAAGCCTATGAACATTTATGTAGCTTGAAAAAACACTTATACGACAAGAAAAAAAATCACAACATGCACAAAGAAG...

CDS

Download CDS FASTA

1590 bp · TkA04G129330|TK1151|CDS

ATGCAGAATCTACAGAAGGAAGTAGAATCTTTAACAGAGAATGTTGTAAAAGCTGAAGCGGCTGCCTTAGCAACAGGAAAAACATATGAGGAGGAAAACAAAAAGGGAGAAGAGCTCGTGGCTCAGTTCCGAGATGCACAAAAAGTCTGCCAACAAGCCTATGAACATTTATGTAGCTTGAAAAAACACTTATACGACAAGAAAAAAAATCACAACATGCACAAAGAAGATATGAATGCAGTAAGTAATGTTGCATCAGG...

Protein

Download Protein FASTA

529 aa · TkA04G129330|TK1151|PROTEIN

MQNLQKEVESLTENVVKAEAAALATGKTYEEENKKGEELVAQFRDAQKVCQQAYEHLCSLKKHLYDKKKNHNMHKEDMNAVSNVASGGDKVALHLSCANQVDTFMEEKNTNDEFREYDIKRIRPSTIDETSHVSDISEKVATNLLTIPSEMEFVLVVSNVDEEKKIPDNQTMVKVVSKIEEEKETVSPPDNQTMVKVVLKVEEEKETVSPPDNQTMVKVVLEVEEEKETVSPPDNQTMLKVVSKVEEGEKIVSPLDNQTM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G129330
TK1151 IDTkA04G129330
OH-1004 IDLXL04_035458
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 58.260
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G129330
LocationChr04:33661326-33664757 (-)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035458 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.604
Rank 1 · TkA04G129330 · TK1151
Nucleus0.299
Rank 2 · TkA04G129330 · TK1151
Cell membrane0.129
Rank 3 · TkA04G129330 · TK1151
Mitochondrion0.054
Rank 4 · TkA04G129330 · TK1151
Golgi apparatus0.049
Rank 5 · TkA04G129330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29515Expansin_N43-55 aa
PF16610dbPDZ_assoc69-106 aa
PF16610dbPDZ_assoc161-193 aa
PF16087DUF4817163-181 aa
PF25251DUF7853171-215 aa
PF25251DUF7853175-244 aa
PF16087DUF4817187-203 aa
PF15856DUF4727194-223 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G129330PF29515Expansin_N43551.59.7
TkA04G129330PF16610dbPDZ_assoc691063.28.8
TkA04G129330PF16610dbPDZ_assoc1611933.28.8
TkA04G129330PF16087DUF48171631810.2112.0
TkA04G129330PF25251DUF78531712150.3112.4
TkA04G129330PF25251DUF78531752440.3112.4
TkA04G129330PF16087DUF48171872030.2112.0
TkA04G129330PF15856DUF47271942236.07.3
TkA04G129330PF16610dbPDZ_assoc2092373.28.8
TkA04G129330PF16087DUF48172102250.2112.0
TkA04G129330PF25251DUF78532222860.3112.4
TkA04G129330PF16087DUF48172312470.2112.0
TkA04G129330PF16610dbPDZ_assoc2312593.28.8
TkA04G129330PF15856DUF47272602996.07.3
TkA04G129330PF16610dbPDZ_assoc2633043.28.8
TkA04G129330PF25251DUF78532673060.3112.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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