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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G127560
Reference: TK1151 Chr: Chr04 Coordinates: 33147341-33149906 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1834 bp · TkA04G127560|TK1151|cDNA

GGAAAAGCAAATACATTTTTACACAAATAATCTTTTTGGTTTTTGGTTGGTTGTTTCTCACTGCCGGTTTGTGGAGAGAAGAGAACCAGCGACCAAATTCTGCTCTCTTTCTCTTTCTCCCTCTCTCTCTCTCACACATCAAAACACACACACATTTGATCGGAGACGACGAGCCTCTGAGCGACCGAATTCCCAACAAACAAACACAGAAGCTGAATTGTACACATGGAATTGCCGGAGATGAAGTTCTGGTGCTGATG...

CDS

Download CDS FASTA

1242 bp · TkA04G127560|TK1151|CDS

ATGGACTTCGCTAGTGGAATTCCGATGTCACGGCCGACTGTAACCGCCGAAGTATCGTCGTCTTTGTCTCCGCCGTTAGACGAAGATGCATTGTGGCAATTGAACTTGAGATCAAGGGAATCAATGGAGTCAGGACCTTATCCTGTGCGTGATGGAGAGCCAGACTGTTCGTACTATATCAGAACAGGGCTTTGTAGATTTGGGGCAACTTGTCGTTTCAATCATCCTCCTAACAGAAAACTGGCTATTGCAACCGCAAA...

Protein

Download Protein FASTA

413 aa · TkA04G127560|TK1151|PROTEIN

MDFASGIPMSRPTVTAEVSSSLSPPLDEDALWQLNLRSRESMESGPYPVRDGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATAKMRGEYPERPGQPECQYYLKTGTCKFGATCKFHHPREKAGIAGQVSLNVLGYPLRPNEAECAYYLRTGQCKFGNTCKFHHSQPSNMMVAYSGSPVYPPAVQSPPSPGQQWSLTRASYVPSPRWQPPSSYTQMILPQGVVSVPGWNAYRGSMGSLSSSESQHQASGGNQGYYALE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G127560
TK1151 IDTkA04G127560
OH-1004 IDLXL04_001128
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)49.500
Protein coverage (%)TK1151 69.007 / OH-1004 72.774
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G127560
LocationChr04:33147341-33149906 (-)
DescriptionSimilar to At2g47850: Zinc finger CCCH domain-containing protein 32
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g02830 Zinc finger CCCH domain-containing protein 33. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0917400 Zinc finger CCCH domain-containing protein 12. No verified direct reference in this release
Os11g0472000 Zinc finger CCCH domain-containing protein 63. No verified direct reference in this release
Os12g0405100 Zinc finger CCCH domain-containing protein 66. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001128 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G47850
ath:AT3G06410
ath:AT5G18550
dosa:Os01g0258700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.544
Rank 1 · TkA04G127560 · TK1151
Cytoplasm0.479
Rank 2 · TkA04G127560 · TK1151
Cell membrane0.074
Rank 3 · TkA04G127560 · TK1151
Endoplasmic reticulum0.035
Rank 4 · TkA04G127560 · TK1151
Golgi apparatus0.023
Rank 5 · TkA04G127560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00642zf-CCCH52-77 aa
PF25585zf-CCCH_DUS3L53-75 aa
PF14608zf-CCCH_255-76 aa
PF29102Su_sable_N55-75 aa
PF15663zf-CCCH_355-77 aa
PF18345zf_CCCH_456-75 aa
PF18044zf-CCCH_456-76 aa
PF16131Torus56-76 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G127560PF00642zf-CCCH52778.9e-48160.1
TkA04G127560PF25585zf-CCCH_DUS3L53756.9e-1968.2
TkA04G127560PF14608zf-CCCH_255766e-1865.3
TkA04G127560PF29102Su_sable_N55750.9410.6
TkA04G127560PF15663zf-CCCH_355772.19.3
TkA04G127560PF18345zf_CCCH_456751.8e-2073.1
TkA04G127560PF18044zf-CCCH_456769.7e-1554.7
TkA04G127560PF16131Torus56764.7e-0627.8
TkA04G127560PF19242Zn_finger_prot56752.18.8
TkA04G127560PF25586zf-CCCH_PAN363780.01116.1
TkA04G127560PF20992CBP66_2nd64751.69.4
TkA04G127560PF00642zf-CCCH961228.9e-48160.1
TkA04G127560PF16131Torus981204.7e-0627.8
TkA04G127560PF29102Su_sable_N1001210.9410.6
TkA04G127560PF15663zf-CCCH_31001242.19.3
TkA04G127560PF18345zf_CCCH_41011201.8e-2073.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GXX7Arabidopsis thalianasp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 3366.100%Swiss-ProtHigh
Q5JLB5Oryza sativa subsp. japonicasp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 1263.000%Swiss-ProtMedium
Q2R4J4Oryza sativa subsp. japonicasp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 6363.900%Swiss-ProtMedium
Q2QT65Oryza sativa subsp. japonicasp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 6662.600%Swiss-ProtMedium

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