TkA04G126690 | RubberDandelionOmics

Gene overview

TkA04G126690

Reference: TK1151 Chr: Chr04 Coordinates: 32896060-32898919 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1297 bp · TkA04G126690|TK1151|cDNA

ATGAAAATTAAAAAGAAAAGGAAGGAATATAGCCCACATACTGCAGATCCGACGTTGTTGGCGATCAACAGCTCTAACCTAAAATCCCGAATCGGCGAATCCCGCCTCCTCCAATTCCATTCGCGACTCCACCTCAAGACCTCAACTCTCGCTGGCCGCTTTTCTCTTCTCGTCGGTCACACAGCGCCTGCTCCGGCCACAGCGCCATATCCGGTTTCAGGCCGCTCTTATCTTCTCGTCGGTCACAGAGCTCCTGCTCC...

CDS

Download CDS FASTA

1035 bp · TkA04G126690|TK1151|CDS

ATGAAAATTAAAAAGAAAAGGAAGGAATATAGCCCACATACTGCAGATCCGACGTTGTTGGCGATCAACAGCTCTAACCTAAAATCCCGAATCGGCGAATCCCGCCTCCTCCAATTCCATTCGCGACTCCACCTCAAGACCTCAACTCTCGCTGGCCGCTTTTCTCTTCTCGTCGGTCACACAGCGCCTGCTCCGGCCACAGCGCCATATCCGGTTTCAGGCCGCTCTTATCTTCTCGTCGGTCACAGAGCTCCTGCTCC...

Protein

Download Protein FASTA

344 aa · TkA04G126690|TK1151|PROTEIN

MKIKKKRKEYSPHTADPTLLAINSSNLKSRIGESRLLQFHSRLHLKTSTLAGRFSLLVGHTAPAPATAPYPVSGRSYLLVGHRAPAPSNQPPISGKHSQEEHYISKLNFTWPHVSCLPGCPPRGSKIVFMSYKDHLGEIQKFAVRFLITDETERFMNFIKEIFGYEKLDRSTPDISTSKTSSQSEKSTPHSISLYLASLVQMRSLKRRFEKSTPHSLSSFCRPTQEWDPISSSPYRPIIDWSPIGSNNADSYSQVSNPME...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G126690`
TK1151 ID	TkA04G126690
OH-1004 ID	LXL04_035498
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	87.900
Protein coverage (%)	TK1151 98.547 / OH-1004 94.412 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G126690

Location Chr04:32896060-32898919 (-)

Description Similar to PHS1: Protein POOR HOMOLOGOUS SYNAPSIS 1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g10710`	Required for accurate chromosome segregation in meiosis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035498 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007129 homologous chromosome pairing at meiosis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G10710

zma:100273885

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.485

Rank 1 · TkA04G126690 · TK1151

Cytoplasm0.401

Rank 2 · TkA04G126690 · TK1151

Cell membrane0.123

Rank 3 · TkA04G126690 · TK1151

Endoplasmic reticulum0.074

Rank 4 · TkA04G126690 · TK1151

Mitochondrion0.068

Rank 5 · TkA04G126690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25349PH_PHS197-166 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G126690	`PF25349`	PH_PHS1	97	166	3.2e-31	108.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q45GQ7`	Arabidopsis thaliana	sp\|Q45GQ7\|POHS1_ARATH Protein POOR HOMOLOGOUS SYNAPSIS 1	52.200%	Swiss-Prot	Low

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