LXL04_035498 | RubberDandelionOmics

Gene overview

LXL04_035498

Reference: OH-1004 Chr: Chr08 Coordinates: 23684872-23687501 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1023 bp · LXL04_035498|LXL04_035498|OH1004|cDNA

AtgaaaattaaaaagaaaaggaaggaATATAGCCCACATACTGCAGATCCGACGTTGTTGGCGATCAACAGCTCTAACCTAAAATCCCGAATCGGCGAATCCCGCCTCCTCCAATTCCATTCGCGACTCCACCTCAAGACCTCAACTCTCGCTGGCCGCTTTTCTCTTCTCGTCGGTCACACAGCGCCTGCTCCGGCCACAGCGCCATATCCGGTTTCAGGCCGCTCTTATCTTCTCGTCGGTCACAGAGCTCCTGCTCC...

CDS

Download CDS FASTA

1023 bp · LXL04_035498|LXL04_035498|OH1004|CDS

ATGAAAATTAAAAAGAAAAGGAAGGAATATAGCCCACATACTGCAGATCCGACGTTGTTGGCGATCAACAGCTCTAACCTAAAATCCCGAATCGGCGAATCCCGCCTCCTCCAATTCCATTCGCGACTCCACCTCAAGACCTCAACTCTCGCTGGCCGCTTTTCTCTTCTCGTCGGTCACACAGCGCCTGCTCCGGCCACAGCGCCATATCCGGTTTCAGGCCGCTCTTATCTTCTCGTCGGTCACAGAGCTCCTGCTCC...

Protein

Download Protein FASTA

340 aa · LXL04_035498|LXL04_035498|OH1004|PROTEIN

MKIKKKRKEYSPHTADPTLLAINSSNLKSRIGESRLLQFHSRLHLKTSTLAGRFSLLVGHTAPAPATAPYPVSGRSYLLVGHRAPAPSNQPPISGKHSQEEHYISKLNFTWPHVSCLPGCPPRGSKIVFMSYKDHLGEASTSNTPIQKFAVRFLITDETERFMNFIKEIFGYEKLDRSTPDISTSKTSSQSEKSTPHSISLYLASLVQMRSLKSKLSSPIIDWSPIGSNNADSYSQVSNPMESTLSQDVQEKLSAFPPSF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035498`
TK1151 ID	TkA04G126690
OH-1004 ID	LXL04_035498
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	87.900
Protein coverage (%)	TK1151 98.547 / OH-1004 94.412 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035498

Location Chr08:23684872-23687501 (+)

Description Similar to PHS1: Protein POOR HOMOLOGOUS SYNAPSIS 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g10710`	Required for accurate chromosome segregation in meiosis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_035498 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007129 homologous chromosome pairing at meiosis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G10710

zma:100273885

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.454

Rank 1 · LXL04_035498 · OH-1004

Nucleus0.421

Rank 2 · LXL04_035498 · OH-1004

Cell membrane0.132

Rank 3 · LXL04_035498 · OH-1004

Mitochondrion0.073

Rank 4 · LXL04_035498 · OH-1004

Endoplasmic reticulum0.067

Rank 5 · LXL04_035498 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25349.2PH_PHS197-173 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035498	`PF25349.2`	PH_PHS1	97	173	5e-29	101.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q45GQ7`	Arabidopsis thaliana	Protein POOR HOMOLOGOUS SYNAPSIS 1	47.297%	Swiss-Prot	weak database homology

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