TkA04G124700 | RubberDandelionOmics

Gene overview

TkA04G124700

Reference: TK1151 Chr: Chr04 Coordinates: 32410109-32412076 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1238 bp · TkA04G124700|TK1151|cDNA

AAAAAGTTGATTCTTCATAGTTCCAACTAGTAAATACCTCATTCCGATAAACCCTGCTCGGGACTGCTGAGAATTACCAACACGAGAAAAATGCTTACAAGTATGGAATTAACTACAATGGCGTCGAGCCCTGTAATATTCAGCCGCAAATCTCCGGTCTTGTTTAACTTCGTGGGCAGCCACGGCAAGCCCACTTTTCAACCAGATTCTGCTAGAAACACTTGTACTAGAAGCTTTTCACCATCTGCATTTGGGTGTAA...

CDS

Download CDS FASTA

882 bp · TkA04G124700|TK1151|CDS

ATGCTTACAAGTATGGAATTAACTACAATGGCGTCGAGCCCTGTAATATTCAGCCGCAAATCTCCGGTCTTGTTTAACTTCGTGGGCAGCCACGGCAAGCCCACTTTTCAACCAGATTCTGCTAGAAACACTTGTACTAGAAGCTTTTCACCATCTGCATTTGGGTGTAATCTTCGCAAAAAATTCTCTACAGAATTGGGGTTTTCTGGAAAAGGGTTAAGGATATTGGGTCATAATGGATTTCGGGTTGAGTCTACCTC...

Protein

Download Protein FASTA

293 aa · TkA04G124700|TK1151|PROTEIN

MLTSMELTTMASSPVIFSRKSPVLFNFVGSHGKPTFQPDSARNTCTRSFSPSAFGCNLRKKFSTELGFSGKGLRILGHNGFRVESTSSGGGSGGSGGDDGSDSGGSGGSGGDGGKKLSFVSWYLALLEAYPVWTKAVTSALLTFVGDLICQVVIDQVPSLDLKRVSLFTFLGLVLVGPTLHFWYLYLSKLVTMTGASGAIVRLIIDQFIFAPAFIGVFLSTLVTLEGRPSQVVPKLQQEWLSSVIANWQLWIPFQFLNFR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G124700`
TK1151 ID	TkA04G124700
OH-1004 ID	LXL04_035532
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA04G124700`
Location	Chr04:32410109-32412076 (+)
Description	Similar to mpv17: Protein Mpv17
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_035532` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006067 ethanol metabolic process Biological Process GO:0010821 regulation of mitochondrion organization Biological Process GO:0048066 developmental pigmentation Biological Process GO:0090207 regulation of triglyceride metabolic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005743 mitochondrial inner membrane Cellular Component GO:0005778 peroxisomal membrane Cellular Component GO:0015267 channel activity Molecular Function
KEGG gene cross-reference	bta:508609 ddi:DDB_G0290223 dre:394140 fgr:FGSG_00730 ncr:NCU02117 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.982

Rank 1 · TkA04G124700 · TK1151

Mitochondrion0.024

Rank 2 · TkA04G124700 · TK1151

Cytoplasm0.020

Rank 3 · TkA04G124700 · TK1151

Peroxisome0.020

Rank 4 · TkA04G124700 · TK1151

Nucleus0.018

Rank 5 · TkA04G124700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19990DUF642694-114 aa

PF04117Mpv17_PMP22224-283 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G124700	`PF19990`	DUF6426	94	114	0.96	9.7
TkA04G124700	`PF04117`	Mpv17_PMP22	224	283	8.1e-21	74.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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