TkA04G123930 | RubberDandelionOmics

Gene overview

TkA04G123930

Reference: TK1151 Chr: Chr04 Coordinates: 32198154-32199472 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1071 bp · TkA04G123930|TK1151|cDNA

ATATAATCTACACGTTTCACTTCCAATCTTGCGTTGTTAATCTTTCATAATCAACAACGATTTCTGTCACCGATAGTCGTGATCACATAAAAGTTAGATATTACATAGAGAAAACGAAGCTATGCCGCCGCGTAGGTACGCCATCGGGAGAGCCGATGAGGCCACACACCCAGACTCCGCACGCGCCACCTTGTCGGAGTTCCTTTCCACCTTCATCTTCGTCTTCGCCGCCGAAGGCTCCGTCCTAGCTCTTGATAAGA...

CDS

Download CDS FASTA

777 bp · TkA04G123930|TK1151|CDS

ATGCCGCCGCGTAGGTACGCCATCGGGAGAGCCGATGAGGCCACACACCCAGACTCCGCACGCGCCACCTTGTCGGAGTTCCTTTCCACCTTCATCTTCGTCTTCGCCGCCGAAGGCTCCGTCCTAGCTCTTGATAAGATGTACGGTCGTGAGCATACACAGGGAGGAGCTGGGCTGCTGCTGGTGGCGCTGGCTCATGCGCTGTCATTGTTCGCCGCCATCGCGTCGAGTTTTAACGTGTCCGGTGGACACATAAATCC...

Protein

Download Protein FASTA

258 aa · TkA04G123930|TK1151|PROTEIN

MPPRRYAIGRADEATHPDSARATLSEFLSTFIFVFAAEGSVLALDKMYGREHTQGGAGLLLVALAHALSLFAAIASSFNVSGGHINPAVTFGTLVAGRVSLVRALYYWVAQLLGAVVASLLLRLATDGMRPIGFAVATGVGNLNALLMEIILTFGLVYTVFATAIDHKRGTLGTIAPLAIAFMVGANILVGGPFEGAAMNPARAFGPALVGWRWNNHWVYWLGPFIGAAIAGLIYEFGIIQPEVPVHTHHQPLAPEDY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G123930`
TK1151 ID	TkA04G123930
OH-1004 ID	LXL04_035552
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G123930

Location Chr04:32198154-32199472 (+)

Description Similar to TIP3-1: Aquaporin TIP3-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g17810`	Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	No verified direct reference in this release
`At1g73190`	Water channel required to facilitate the transport of water from the vacuolar compartment to the cytoplasm.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0492600`	Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035552 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006833 water transport Biological Process

GO:0006914 autophagy Biological Process

GO:0000326 protein storage vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0032586 protein storage vacuole membrane Cellular Component

GO:0042807 central vacuole Cellular Component

GO:0015250 water channel activity Molecular Function

KEGG gene cross-reference

ath:AT1G17810

ath:AT1G73190

dosa:Os10g0492600

zma:541896

zma:541912

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.561

Rank 1 · TkA04G123930 · TK1151

Lysosome / Vacuole0.231

Rank 2 · TkA04G123930 · TK1151

Cytoplasm0.143

Rank 3 · TkA04G123930 · TK1151

Endoplasmic reticulum0.103

Rank 4 · TkA04G123930 · TK1151

Golgi apparatus0.066

Rank 5 · TkA04G123930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00230MIP14-235 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G123930	`PF00230`	MIP	14	235	2.8e-77	260.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22588`	Arabidopsis thaliana	sp\|O22588\|TIP32_ARATH Probable aquaporin TIP3-2	69.700%	Swiss-Prot	High
`P26587`	Arabidopsis thaliana	sp\|P26587\|TIP31_ARATH Aquaporin TIP3-1	69.100%	Swiss-Prot	High
`Q9FWV6`	Oryza sativa subsp. japonica	sp\|Q9FWV6\|TIP31_ORYSJ Probable aquaporin TIP3-1	62.700%	Swiss-Prot	High

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